PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G04170.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 110aa    MW: 11941.8 Da    PI: 10.549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G04170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.3e-064592855
                     HHHHHHHH...HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  8 rErrRRdr...iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      ErrR++r   ++ ++e Lr+l+P     +++  s  e L +A +YI  Lq
  ORUFI05G04170.1 45 KERRRMRRcveVRRKMEALRRLVPGG---GGGEDSGEELLFRAADYIARLQ 92
                     456665543349*************9...9*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-939106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-644107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MVAHATINNG RCDAAPAAAA KSRPAVMPPP ASNHGAACKN SGSNKERRRM RRCVEVRRKM  60
EALRRLVPGG GGGEDSGEEL LFRAADYIAR LQVQVKVMQL MVDVLEQTKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637969.11e-75transcription factor IBH1
TrEMBLA0A0E0PHT63e-74A0A0E0PHT6_ORYRU; Uncharacterized protein
TrEMBLA0A0P0WI613e-74A0A0P0WI61_ORYSJ; Os05g0157400 protein
TrEMBLA2Y0L73e-74A2Y0L7_ORYSI; Uncharacterized protein
STRINGORUFI05G04170.15e-75(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91112126