PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G02190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 311aa    MW: 33348.2 Da    PI: 5.0141
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G02190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092442772255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yp++e++ +LA+ +gL+ +q+ +WF N+R ++
  ORUFI05G02190.1 244 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 277
                      59*****************************885 PP

2ELK33.11.2e-11197218122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++Ll+KYsg+L+ L++EF+
  ORUFI05G02190.1 197 ELKEMLLKKYSGCLSRLRSEFL 218
                      9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-185397IPR005540KNOX1
PfamPF037901.6E-195594IPR005540KNOX1
SMARTSM012564.0E-27104155IPR005541KNOX2
PfamPF037912.8E-23108154IPR005541KNOX2
SMARTSM011883.6E-6197218IPR005539ELK domain
PfamPF037891.4E-8197218IPR005539ELK domain
PROSITE profilePS5121310.423197217IPR005539ELK domain
PROSITE profilePS5007112.681217280IPR001356Homeobox domain
SuperFamilySSF466898.55E-20219288IPR009057Homeodomain-like
SMARTSM003892.5E-14219284IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-27222282IPR009057Homeodomain-like
CDDcd000863.64E-13229281No hitNo description
PfamPF059205.2E-17237276IPR008422Homeobox KN domain
PROSITE patternPS000270255278IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEDLYSIHPG ISRGGGGGGG GAASEASGVA GGGSSPPHPP PPATTAAAAD LTELMKAQIA  60
GHPSYPSLLS AYIECRKVGA PPEVTTLLEE IGREGRGGGG GATAGGEIGL DPELDEFMET  120
YCRVLERYKE ELTRPFDEAA SFLTGIHTQL ASLCGGAPPP TDNSDEMVGS SEDEPCSGDA  180
DAADFGQEHS SRLADHELKE MLLKKYSGCL SRLRSEFLKK RKKGKLPKDA RSALMDWWNT  240
HYRWPYPTEE DKVRLAAMTG LDPKQINNWF INQRKRHWKP SEDMRFALME GVTGGSSSGT  300
TLYFDTGTIG P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212221LRSEFLKKRK
2218222KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288850.0AB028885.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH71, complete cds.
GenBankAF0501800.0AF050180.1 Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn2) mRNA, complete cds.
GenBankAK1118780.0AK111878.1 Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637898.10.0homeobox protein knotted-1-like 10
SwissprotA2Y0070.0KNOSA_ORYSI; Homeobox protein knotted-1-like 10
SwissprotQ7GDL50.0KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBLA0A0D3G2U30.0A0A0D3G2U3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H8Y20.0A0A0E0H8Y2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PH180.0A0A0E0PH18_ORYRU; Uncharacterized protein
TrEMBLB8AXK90.0B8AXK9_ORYSI; Uncharacterized protein
TrEMBLI1PS570.0I1PS57_ORYGL; Uncharacterized protein
STRINGORUFI05G02190.10.0(Oryza rufipogon)
STRINGOS05T0129700-010.0(Oryza sativa)
STRINGONIVA05G02030.10.0(Oryza nivara)
STRINGORGLA05G0020500.10.0(Oryza glaberrima)
STRINGOBART05G02090.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-78KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  2. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  3. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  4. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  5. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  6. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  7. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  8. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]
  9. Xu Y, et al.
    OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
    Plant J., 2015. 83(5): p. 806-17
    [PMID:26121094]
  10. Kir G, et al.
    RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture.
    Plant Physiol., 2015. 169(1): p. 826-39
    [PMID:26162429]