PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI05G01980.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 1847aa MW: 198775 Da PI: 7.6347

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI05G01980.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	994	1036	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W +eE e++ + + +G++ +++I++ ++ ++t +c+++++k+ ORUFI05G01980.2 994 PWIQEEKEIFMEKLATFGKD-FSKISSFLQ-HKTTADCIEFYYKH 1036 899*************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.28E-13	977	1039	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.547	990	1041	IPR017884	SANT domain
SMART	SM00717	4.8E-7	991	1039	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-5	994	1036	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-5	994	1038	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.728	1199	1250	IPR017884	SANT domain
SMART	SM00717	6.6E-4	1200	1248	IPR001005	SANT/Myb domain
CDD	cd00167	0.00143	1204	1242	No hit	No description
SuperFamily	SSF46689	1.79E-8	1204	1250	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1847 aa Download sequence Send to blast
MASTAAAASR RESSAASRTL VWSWWRGGRG GGVLGLPARP RERSWPLIVG QGRTQGCGSI 60 GVKGLGLRPL YRLTLSQAAA ASVFSPLLSS PPHLSPLSPS FSPAPRPPPP PPPPPPPPPS 120 LHADQGASAS AHAAADASPT WGALGAAACT SDCLPDSTPR ISSAACSTGG GEGKAWTSSP 180 GIGGGRRRCR VGFFAARMRR PELGIRAGWT TTTTTTTTPW MPPPPPDRRD FLYRDGRRHD 240 GDPLPPPAPT PPRWRDSPYH PPPPPPPLRD HSRPSPRRTP SSASSDGYYR QGGGSYDRSY 300 PDESLGYTPS RSDRYWLDDD GGGGGYKGFS RYGGGGGGGS RRDGRDMRGS YRRSPFRGYG 360 SDFSRNHQEH PPPPLRRSPL RSVAVPMSYD PPGDRADRGD RDHHHRVTPW RPLRRRESRS 420 DAADAAGAGP VPVGQAAAAA ASEKDVSARS SAVAAPQVSE EEAPRKKPRL GWGQGLAKYE 480 KQKVQGPAES AEAVAEGSPT ATEQKGITHT PAPAPCVSPV AAPSPTPCAS PVAAPSPAPC 540 VSPVAAPSPA PPCKSPVPED KSCELTANTV TESNKNIPGP DVQACNNEVP TKLDQLEGDP 600 IDSLAKVLSE LVQHEDSCSG DSKRLSNVSK LLLLKESISK ELEKTELEID SLEGELKSVN 660 VEARNRTLKD PPTAVTYAQN PSPSPVKEQG ELTPSPKISM EQDADVKGSE LMEIETAQAH 720 NAKAVSSEES VACPGVALGQ VPAAADVIPS DPCGKTGSGI DVDIEQREEN PCQETFNAMK 780 ADGSSDLATR PCSYREVKYN LMDQIIAANR SEAKKNSQLL FKPVPADRSN LDLLASSYLS 840 SQMKNDVIIK KKHAILKNRQ RFKEQILTFK FRVLRHLWKE DVRLLSVRKQ RSKSHKRTDQ 900 SNRSSQSGSQ RQRSSNRSRL AVPAGNLSTF PITEMSGVAR KLFSEFQLKR CRNYLKMPAL 960 IVDEKEKAGA KFVSKNGLVE DPVSVEKERA LINPWIQEEK EIFMEKLATF GKDFSKISSF 1020 LQHKTTADCI EFYYKHHKSD SFREVKKLLD LRQQQQPASN YLGAVSGKKW NPEANAASLD 1080 MLGVATEVAA QGLEYVNEVK KNSAKSILRT VCGVDNSTKG SEKDCVGDVS LHERESVAAD 1140 VLAGICGTLS PEGMGSCITS SADPGQKIGI ISRMEHLLTP EADKNFDDDG TLSDQECEVD 1200 IVDWNDDEKS SFIEAMNRYG KDFARISSYV KSKSFEQCKV FFSKARKSLG LDLIHQGAAD 1260 AGFPTGDANG GRSGTDGACI AEMDSAICSA QSCPKVEIDA CPVSDGEIQG HNPLSDIASR 1320 QPEADKSNMP DVVDINVEEG ESKAEKDCSI LVDHKQLRED INQTSCARID INCPESTDKL 1380 QDIEDVTPVN MHGDDLMATS VEQVAAAHVE SRSSLHSEGI GIDVSRIEGC SHESTIGKGG 1440 KSTPSVCLPA ENGVSKENII HFSNMDGASS ISPAFTSNYQ QSKLADPIQS KPKPLTPKDL 1500 MPVQFSSSLP DPTSICFEGI AAITTPNFED HGNRASIASG AKDVNMFPTF KDQSSNRHDA 1560 LFSNVDGYMQ QRRNNHFGTE VCGLSESTGI SQSDQFTVSK FQNGRPSSLG LSNGNLGVLS 1620 TGRREEAREG LFRPCSVKTS AGNEEQQKRP GDVKLFGQIL SHQSSLQSSG SSVHGSKSKP 1680 PSPKVDKPAS SRLLSNPRER LVYSSRPPII ANLGLEERAM RSFDHMDGRT IQPEPMVMVA 1740 KCQRPSAGVP VYSTKNGTLS VFAEFQQPSM PPHTSDHKLL ENFADLHKRN GIELLSGFQQ 1800 PGRLGGAGVL VSGVSDPVAA LKAQYGSGSK MLSSSNDVDT WKDIGSR

Sequence ? help Back to Top

Protein Sequence Length: 1847 aa Download sequence Send to blast

MASTAAAASR RESSAASRTL VWSWWRGGRG GGVLGLPARP RERSWPLIVG QGRTQGCGSI  60
GVKGLGLRPL YRLTLSQAAA ASVFSPLLSS PPHLSPLSPS FSPAPRPPPP PPPPPPPPPS  120
LHADQGASAS AHAAADASPT WGALGAAACT SDCLPDSTPR ISSAACSTGG GEGKAWTSSP  180
GIGGGRRRCR VGFFAARMRR PELGIRAGWT TTTTTTTTPW MPPPPPDRRD FLYRDGRRHD  240
GDPLPPPAPT PPRWRDSPYH PPPPPPPLRD HSRPSPRRTP SSASSDGYYR QGGGSYDRSY  300
PDESLGYTPS RSDRYWLDDD GGGGGYKGFS RYGGGGGGGS RRDGRDMRGS YRRSPFRGYG  360
SDFSRNHQEH PPPPLRRSPL RSVAVPMSYD PPGDRADRGD RDHHHRVTPW RPLRRRESRS  420
DAADAAGAGP VPVGQAAAAA ASEKDVSARS SAVAAPQVSE EEAPRKKPRL GWGQGLAKYE  480
KQKVQGPAES AEAVAEGSPT ATEQKGITHT PAPAPCVSPV AAPSPTPCAS PVAAPSPAPC  540
VSPVAAPSPA PPCKSPVPED KSCELTANTV TESNKNIPGP DVQACNNEVP TKLDQLEGDP  600
IDSLAKVLSE LVQHEDSCSG DSKRLSNVSK LLLLKESISK ELEKTELEID SLEGELKSVN  660
VEARNRTLKD PPTAVTYAQN PSPSPVKEQG ELTPSPKISM EQDADVKGSE LMEIETAQAH  720
NAKAVSSEES VACPGVALGQ VPAAADVIPS DPCGKTGSGI DVDIEQREEN PCQETFNAMK  780
ADGSSDLATR PCSYREVKYN LMDQIIAANR SEAKKNSQLL FKPVPADRSN LDLLASSYLS  840
SQMKNDVIIK KKHAILKNRQ RFKEQILTFK FRVLRHLWKE DVRLLSVRKQ RSKSHKRTDQ  900
SNRSSQSGSQ RQRSSNRSRL AVPAGNLSTF PITEMSGVAR KLFSEFQLKR CRNYLKMPAL  960
IVDEKEKAGA KFVSKNGLVE DPVSVEKERA LINPWIQEEK EIFMEKLATF GKDFSKISSF  1020
LQHKTTADCI EFYYKHHKSD SFREVKKLLD LRQQQQPASN YLGAVSGKKW NPEANAASLD  1080
MLGVATEVAA QGLEYVNEVK KNSAKSILRT VCGVDNSTKG SEKDCVGDVS LHERESVAAD  1140
VLAGICGTLS PEGMGSCITS SADPGQKIGI ISRMEHLLTP EADKNFDDDG TLSDQECEVD  1200
IVDWNDDEKS SFIEAMNRYG KDFARISSYV KSKSFEQCKV FFSKARKSLG LDLIHQGAAD  1260
AGFPTGDANG GRSGTDGACI AEMDSAICSA QSCPKVEIDA CPVSDGEIQG HNPLSDIASR  1320
QPEADKSNMP DVVDINVEEG ESKAEKDCSI LVDHKQLRED INQTSCARID INCPESTDKL  1380
QDIEDVTPVN MHGDDLMATS VEQVAAAHVE SRSSLHSEGI GIDVSRIEGC SHESTIGKGG  1440
KSTPSVCLPA ENGVSKENII HFSNMDGASS ISPAFTSNYQ QSKLADPIQS KPKPLTPKDL  1500
MPVQFSSSLP DPTSICFEGI AAITTPNFED HGNRASIASG AKDVNMFPTF KDQSSNRHDA  1560
LFSNVDGYMQ QRRNNHFGTE VCGLSESTGI SQSDQFTVSK FQNGRPSSLG LSNGNLGVLS  1620
TGRREEAREG LFRPCSVKTS AGNEEQQKRP GDVKLFGQIL SHQSSLQSSG SSVHGSKSKP  1680
PSPKVDKPAS SRLLSNPRER LVYSSRPPII ANLGLEERAM RSFDHMDGRT IQPEPMVMVA  1740
KCQRPSAGVP VYSTKNGTLS VFAEFQQPSM PPHTSDHKLL ENFADLHKRN GIELLSGFQQ  1800
PGRLGGAGVL VSGVSDPVAA LKAQYGSGSK MLSSSNDVDT WKDIGSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	7e-16	952	1043	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	7e-16	952	1043	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070653	0.0	AK070653.1 Oryza sativa Japonica Group cDNA clone:J023055D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639126.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639127.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639128.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639129.1	0.0	uncharacterized protein LOC9268524
TrEMBL	A0A0E0PGZ0	0.0	A0A0E0PGZ0_ORYRU; Uncharacterized protein
STRING	ORUFI05G01980.4	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-76	MYB family protein