PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G00890.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 355aa    MW: 36777.9 Da    PI: 8.5814
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G00890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.17.9e-38102160361
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      e  lkcprCdstntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg+r++ k+
  ORUFI05G00890.1 102 EPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGSRRHAKR 160
                      56789************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3885159IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.956105159IPR003851Zinc finger, Dof-type
PfamPF027012.5E-32105159IPR003851Zinc finger, Dof-type
PROSITE patternPS013610107143IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MIFPPAFLDS SSWNDNNNNN HNQQQQQQQQ QHAHGHHQHH QVAAGCGGGG GGGDGNSHEL  60
LQQQSMIPGT LADGGGGGGA VGPAKPMSMS ERARLARIPL PEPGLKCPRC DSTNTKFCYF  120
NNYSLSQPRH FCRACRRYWT RGGALRNVPV GGGSRRHAKR AKPKPASAAG SASAATTTAG  180
STPAGSTTTT TTSSTCATPN APALPAMLGG NLSILPPLLR LADFDAMSLG STFSGMAAPA  240
GKPPPVDAAG CYSVGAATGL EQWRLQQMQS FPFFHAMDHQ AAMAAPPPAM AMPGMFQLGL  300
DGDGHGGGGG EDGGELHHAM PSSKREGYPR GMYGDHHLAG GYTSYSSATT GNHLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1089330.0AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881094.10.0dof zinc finger protein DOF3.6 isoform X2
TrEMBLA0A0E0PGL60.0A0A0E0PGL6_ORYRU; Uncharacterized protein
STRINGORUFI05G00890.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.15e-44OBF-binding protein 3