PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI04G32600.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 898aa MW: 101193 Da PI: 7.1249

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI04G32600.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.5	3.1e-50	528	656	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v ORUFI04G32600.2 528 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 620 79**************************.89**********95357788999******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle ORUFI04G32600.2 621 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 656 .999*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03016	4.6E-42	53	340	IPR004263	Exostosin-like
SuperFamily	SSF101941	9.29E-61	519	678	IPR003441	NAC domain
PROSITE profile	PS51005	56.488	528	678	IPR003441	NAC domain
Pfam	PF02365	6.9E-26	529	655	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005768	Cellular Component	endosome
GO:0005802	Cellular Component	trans-Golgi network
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MRSSHQPLCT RAHQAAALLL VAATFFLTRL LDRSPLSAPP PPCAAPYSPW PHRDLRIYVY 60 AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTFDKD EADLFFVPTY 120 VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR 180 SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR 240 AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL 300 RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM 360 IGRGREIRCL WMYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH 420 EWRMPRFGGE EEEGRRRREP PASLRCAPPL SNSTSPLLLA NTPASCVPFP SPLLSSQSLI 480 PPLSYRIRIS TTIHHLLSAA APHFLPSPTA TTSYRQRSIL LSMAKTSLPP GFRFHPTDVE 540 LTVYYLKRKL LGKHLRCNAV SELDLYKFAP WDLPEKSSLQ SKDREWYFFC PRDRKYSSGS 600 RTNRSTEAGY WKATGKDRPV IYNSQTVGMK RTLVFHLGKP PRGDRTDWVM YEYRLEDKEL 660 SASGVKLDAC VLCKIFQKSG PGPKIGEQYG APFNEDDWNE ANGELSSFAF SVPPCALESS 720 NGRLNTAGQQ LAVSDNIGSS LDHCSETNDK IAVGGCGTTS PSVPFDTIHT QQLAEIISCF 780 STDLLNSVSR DGSLPDSTAD YDNDNEVSSD DGEAIFNELD ELDSQSDESI SNHCNSCGED 840 LIPPTLEVLK TEQYLELNDL SFSLADDPDP CNLLLTTNLS DQNHPELETS SNRKVLRL

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MRSSHQPLCT RAHQAAALLL VAATFFLTRL LDRSPLSAPP PPCAAPYSPW PHRDLRIYVY  60
AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTFDKD EADLFFVPTY  120
VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR  180
SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR  240
AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL  300
RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM  360
IGRGREIRCL WMYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH  420
EWRMPRFGGE EEEGRRRREP PASLRCAPPL SNSTSPLLLA NTPASCVPFP SPLLSSQSLI  480
PPLSYRIRIS TTIHHLLSAA APHFLPSPTA TTSYRQRSIL LSMAKTSLPP GFRFHPTDVE  540
LTVYYLKRKL LGKHLRCNAV SELDLYKFAP WDLPEKSSLQ SKDREWYFFC PRDRKYSSGS  600
RTNRSTEAGY WKATGKDRPV IYNSQTVGMK RTLVFHLGKP PRGDRTDWVM YEYRLEDKEL  660
SASGVKLDAC VLCKIFQKSG PGPKIGEQYG APFNEDDWNE ANGELSSFAF SVPPCALESS  720
NGRLNTAGQQ LAVSDNIGSS LDHCSETNDK IAVGGCGTTS PSVPFDTIHT QQLAEIISCF  780
STDLLNSVSR DGSLPDSTAD YDNDNEVSSD DGEAIFNELD ELDSQSDESI SNHCNSCGED  840
LIPPTLEVLK TEQYLELNDL SFSLADDPDP CNLLLTTNLS DQNHPELETS SNRKVLRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-49	524	678	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064646	0.0	AK064646.1 Oryza sativa Japonica Group cDNA clone:002-114-D03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0PG86	0.0	A0A0E0PG86_ORYRU; Uncharacterized protein
STRING	ORUFI04G32600.2	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9932	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	2e-77	NAC domain containing protein 82