PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G32360.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 360aa    MW: 39496.4 Da    PI: 6.6025
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G32360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604.2e-193644099
                     ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE-S CS
               B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfrk 99
                     d++g sWe+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+  g    e++l+v+v+r+
  ORUFI04G32360.1  3 DLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCGApaPERKLLVGVRRA 64
                     899*****************************************886557999999999986 PP
2Auxin_resp46.41.7e-1687162174
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsdldpvrW 74 
                      a++ a+++ +F+v+Y+Pr ++ eFvv++ +v k l++++  Gm+++ + +e ed ++  +  Gt + +++ +  r 
  ORUFI04G32360.1  87 AVRLAAEQAAFRVTYYPRHGAGEFVVPRVEVDKGLTTPWRCGMQVRAQvMEAEDTRRLAWlNGTLTNLRHQQIWRT 162
                      5778999***************************************9758***************99998666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.844165IPR003340B3 DNA binding domain
CDDcd100173.86E-13363No hitNo description
Gene3DG3DSA:2.40.330.103.6E-18373IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-15363IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-16364IPR003340B3 DNA binding domain
PfamPF065072.8E-1287167IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGDLQGDSWE FRHIYRGTPR RHLLTTGWSK FVNAKQLVAG DTVVFMWCGA PAPERKLLVG  60
VRRAARYSGE SACNARGRVQ PQEVMEAVRL AAEQAAFRVT YYPRHGAGEF VVPRVEVDKG  120
LTTPWRCGMQ VRAQVMEAED TRRLAWLNGT LTNLRHQQIW RTLEVEWDAS AASSSMKNRF  180
VNPWQVQPVD FPPLPMGLKI SNNNISAPVC NGDSLLVPPI LMHPQPQPPA DIQGARHNNG  240
HAYADIPSSS TPSMVRTQQL FPRDLQILVP HTDIVTPQNG SPPDNPVNTP LSASDGMKTI  300
QLFGVTITSP VQGDTNGAFA SAQVNQVPEG VDDETATEEA SDTSLPDSLT NGHNQDGARL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A8e-253190168356Auxin response factor 1
4ldy_B8e-253190168356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094490.0AK109449.1 Oryza sativa Japonica Group cDNA clone:001-113-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634416.10.0auxin response factor 13
SwissprotQ7XSS90.0ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A0E0PG540.0A0A0E0PG54_ORYRU; Auxin response factor
STRINGORUFI04G32360.10.0(Oryza rufipogon)
STRINGOS04T0690600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.16e-41auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]