PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G32320.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 477aa    MW: 51976 Da    PI: 9.1606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G32320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.4e-06248270223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +CpdCg+ F r+++L+ H++  H
  ORUFI04G32320.1 248 SCPDCGEIFVRPDSLHLHQSIrH 270
                      8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280247270IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871247275IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-20272476No hitNo description
Gene3DG3DSA:3.90.228.101.3E-12274476IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MVEPGRARET KVTASASSSA GSDAAVMKKK KKKKKKLVVA SRKVDEKDKK QVDYKCSRSS  60
GRDECCKVES RHQQCTEPES PSYRLALRSL FSCRNSSSSS HAGHHHHRAA DGKKLGCNSA  120
SICKVKQDNP MQQHMRRAED ELKVKDKPPV AEPYCKRRAS VSACNISSER SVKKSVKQQQ  180
QEASSSLQSS ASISASSCSS TAGGGGSFRG MQQLSLRRLS GCYECHMVVD PISGVFRDSS  240
SMRATICSCP DCGEIFVRPD SLHLHQSIRH AVSELGAEDT SRNIISIIFQ SSWLKKQSPV  300
CAIDRILKVH NAARTLARFD DYRAAVKAKA MAHRHPRCTA DGNELLRFHC ATLSCDLGLH  360
GATHLCDHLS CAACAIIRHG FRPPAPGAGI RTMATSGRAH DAVVSSRSEG DRRAMLVCRV  420
IAGRVRREEA AAAAAEEEEE EYDSVAGTTP GLYSNLDELD VFNPTAILPC FVVVYRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12735KKKKKKKKK
22935KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0998560.0AK099856.1 Oryza sativa Japonica Group cDNA clone:J013110K19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634280.10.0uncharacterized protein LOC4337494
TrEMBLA0A0E0PG480.0A0A0E0PG48_ORYRU; Uncharacterized protein
STRINGORUFI04G32320.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.16e-87C2H2-like zinc finger protein