PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G30850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 675aa MW: 75984.5 Da PI: 6.8642 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.7e-06 | 116 | 138 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +f + G C GdrC F Hgp ORUFI04G30850.1 116 VPCYYFKK-GNCLKGDRCAFYHGP 138 689*9999.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.953 | 31 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0064 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 1.8E-11 | 33 | 88 | No hit | No description |
PROSITE profile | PS50103 | 10.991 | 62 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.45 | 64 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 112 | 139 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.61E-5 | 113 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 113 | 138 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.4 | 117 | 137 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 117 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MEADGAAAAA AAGEASTEAG ARPLAPEEEA LRRNTDCVYF LASPLTCKKG NECDFRHSDN 60 ARMNPRDCWY WLNSNCLNPK CPFRHPPIDG MFGAPTTGMP AVSSHYAPFN SGKQLVPCYY 120 FKKGNCLKGD RCAFYHGPQS VGNNPSEQVV KVSSLPLEQL QTQKNDLLGI KDSVQSTNSI 180 QHGAPITNER GKTAVDRSTV NSARTATVAI PVASNAMSCP KSEKVKSSTP AALKESFTTS 240 SGGDHPECYQ NHFPMDSDPV RDWNQSYEMP PADDLPQNSR EADELLGESS PGFDVLVDND 300 ADGAAYLHDE DFGGDMYPVE DYEYAPADFD VRAHHERERF NGMDEQDQMG HMYDGYERKR 360 RRSSERSMER PFHSERRFLQ RDRDRVEMDG SDLRHRLRRR RINESSLAIS PERNGEQRRR 420 DERYRERAHG HRSHRDHHQS SRGSTLSSRL QGRIKLPGRS PDRVDTRSEK ERDRRRLRDR 480 LSPVRRTEFQ GTRHREAGQH EEQTQRRSSE LALGSRNADG QHLTKDVPDS HNFPHRKNLR 540 DSSKANGSVE PEASLDFEGP KPLSVILQRK REAAWANGTS ACSPKQDKSA EVSHRQASLA 600 EAEKEGDNVI SSDEYKSGSG DEEFRDEGHI PVEGHGQSSS HGDKLEAEDI IEFIVPKPLF 660 IRLITDKYRS GMKRG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 357 | 361 | RKRRR |
2 | 357 | 362 | RKRRRS |
3 | 473 | 480 | RRRLRDRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070857 | 0.0 | AK070857.1 Oryza sativa Japonica Group cDNA clone:J023066C11, full insert sequence. | |||
GenBank | HQ858841 | 0.0 | HQ858841.1 Oryza sativa Japonica Group isolate UT1510 C3H-related transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636581.1 | 0.0 | zinc finger CCCH domain-containing protein 32 | ||||
Swissprot | Q0J952 | 0.0 | C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A0E0PFI7 | 0.0 | A0A0E0PFI7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G30850.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6604 | 32 | 41 |
Publications ? help Back to Top | |||
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