PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G30790.1
Common Namesh4, SHA1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 390aa    MW: 41451.2 Da    PI: 9.2265
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G30790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.85e-1767152271
         trihelix   2 WtkqevlaLiearremeerlrr.gk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                      Wt +e+l Li+a+r +++r    g                +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e++ 
  ORUFI04G30790.1  67 WTLHETLILITAKRLDDDRRAGvGGaaaggggagspptprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRV 152
                      *************966666553122345666677777777*****************************************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.60959139IPR017877Myb-like domain
PfamPF138377.3E-1166150No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSGSSADPSP SASTAGAAVS PLALLRAHGH GHGHLTATPP SGATGPAPPP PSPASGSAPR  60
DYRKGNWTLH ETLILITAKR LDDDRRAGVG GAAAGGGGAG SPPTPRSAEQ RWKWVENYCW  120
KNGCLRSQNQ CNDKWDNLLR DYKKVRDYES RVAAAAATGG AAAANSAPLP SYWTMERHER  180
KDCNLPTNLA PEVYDALSEV LSRRAARRGG ATIAPTPPPP PLALPLPPPP PPSPPKPLVA  240
QQQHHHHGHH HHPPPPQPPP SSLQLPPAVV APPPASVSAE EEMSGSSESG EEEEGSGGEP  300
EAKRRRLSRL GSSVVRSATV VARTLVACEE KRERRHRELL QLEERRLRLE EERTEVRRQG  360
FAGLIAAVNS LSSAIHALVS DHRSGDSSGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302306KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2032430.0EF203243.1 Oryza rufipogon shattering 1 (SHA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635337.10.0trihelix transcription factor ASR3
TrEMBLA2TIR20.0A2TIR2_ORYRU; Putative shattering protein
STRINGORUFI04G30790.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.14e-42Trihelix family protein
Publications ? help Back to Top
  1. Lin Z, et al.
    Origin of seed shattering in rice (Oryza sativa L.).
    Planta, 2007. 226(1): p. 11-20
    [PMID:17216230]
  2. Thurber CS, et al.
    Molecular evolution of shattering loci in U.S. weedy rice.
    Mol. Ecol., 2010. 19(16): p. 3271-84
    [PMID:20584132]