PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G30260.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 900aa    MW: 99359.3 Da    PI: 6.0897
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G30260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.4e-21143233186
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F +++
  ORUFI04G30260.1 143 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRTS 233
                      89*********************999*****9555555.49***********************************************9544 PP
2Auxin_resp898.6e-302312961883
       Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      r+s+s Fv++v++++ka++++ svGmRf m+fete+ss+rr++Gtvvg+sd+dp+rWpnSkWr+L+
  ORUFI04G30260.1 231 RTSPSPFVIPVARYNKATYMQPSVGMRFAMMFETEESSKRRYTGTVVGISDYDPMRWPNSKWRNLQ 296
                      799*************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-40133238IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-34136237IPR015300DNA-binding pseudobarrel domain
CDDcd100173.02E-19142229No hitNo description
PROSITE profilePS5086312.182143245IPR003340B3 DNA binding domain
PfamPF023622.5E-19143234IPR003340B3 DNA binding domain
SMARTSM010194.2E-18143247IPR003340B3 DNA binding domain
PfamPF065075.9E-25231296IPR010525Auxin response factor
PfamPF023091.8E-10751884IPR033389AUX/IAA domain
SuperFamilySSF542776.54E-9794876No hitNo description
PROSITE profilePS5174525.501797881IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MASSQEKAKT GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY  60
FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEVY AQMTLQPVNS  120
ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN  180
QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RTSPSPFVIP  240
VARYNKATYM QPSVGMRFAM MFETEESSKR RYTGTVVGIS DYDPMRWPNS KWRNLQVEWD  300
EHGYGERPER VSIWDIETPE NTLVFPSSTL NSKRQCLPGY GVSVPGMEIG SANMSSFPRA  360
QGNPYGSLQH IPAVGSELAI MLLNQSGQTL GSPLSFHQSS YSSIIQNVKQ NYIPPLTVST  420
SACLTKQESL PSDDAQHQFH MANMQNGDLE GSEVQPVIDS ISESKLNATS RDPRNTDSYT  480
SRSTSEQNSK GEPRGKTRRS KKGLPHKTVS EKSDLSSAPS WICDNQQVGL ESKLVGCDEQ  540
VNCGNIEDSS GALTQGNFVG QPHGHQVEQK GVLSPPKVES SKSPDGGKSV NSFPNQGCFS  600
QFIDGLDWMT QPSYYQDSNV IQPAGVSENI FSSSADIPPS MIADTMETFQ ASCLSDCLPN  660
SIQEFISSPD LNSLTFLSPD MQNLEVQLQH DGSNLPSTSN SFVQMSFSEE SASQSANLSG  720
LHMESTHRSI NTTSCSQPMS TGGFDAGMYS KLPRLKESQI LSLPEIHTNS MGTSACSMDA  780
TEYSLDRSAK PMKPPVRTYT KVQKQGSVGR SIDVTGFRNY HELRSAIACM FGLQGKLEHP  840
GSSEWKLVYV DYENDVLLVG DDPWEEFINC VRCIRILSPS EVQQMSENGM HVLNDCIQAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-16013195390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712920.0AB071292.1 Oryza sativa OsMP mRNA for Arabidopsis Monopteros-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881052.10.0auxin response factor 11-like isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A0E0PFA60.0A0A0E0PFA6_ORYRU; Auxin response factor
STRINGORUFI04G30260.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.11e-165ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]