PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI04G29120.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 525aa MW: 55690.8 Da PI: 9.0767 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.4 | 3e-07 | 161 | 182 | 1 | 22 |
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 s+y+GV++++++grW+++I+ + ORUFI04G29120.7 161 SQYRGVTFYRRTGRWESHIWAY 182 78*****************984 PP | |||||||
2 | AP2 | 26.5 | 1.6e-08 | 282 | 317 | 11 | 55 |
AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ ++++ +++++lg f+t+eeAa+a+++a+ k +g ORUFI04G29120.7 282 SSCGFLVH---------CRYVYLGLFDTEEEAARAYDRAAIKCNG 317 23334444.........6**********************99776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.25E-5 | 161 | 200 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-7 | 162 | 205 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.77E-19 | 234 | 327 | No hit | No description |
Pfam | PF00847 | 1.0E-6 | 234 | 317 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-26 | 235 | 331 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-14 | 235 | 256 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.251 | 235 | 325 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-6 | 236 | 247 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-10 | 288 | 327 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-14 | 289 | 325 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-6 | 307 | 327 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 525 aa Download sequence Send to blast |
MRSSSSKATP TTSPAFRVLC SPPSAKSPRP NKGEDGGGEA EASHRRGKGD AMWDLNDSPA 60 AEAAPPPLSP SADDSGASSS SAAAVVEIPD DADDDSAAVV VVTRQFFPPA VPGGGGDPAP 120 GNARAGWLRL AGAAPPVAAT GPAASAAVSK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW 180 AYDRAAIKFR GVEADINFSL EDYEDDLKQM SNLTKEEFVH VLRRQSTGFP RGSSKYRGVT 240 LHKCGRWEAR MGQFLGKKYV LIDHRFFLFR SIVRSWAISR KSSCGFLVHC RYVYLGLFDT 300 EEEAARAYDR AAIKCNGKDA VTNFDPSIYA GEFEPPAAAT GDAAEHNLDL SLGSSAGSKR 360 GNVDGGGDDE ITGGGGGGAG SDQRVPMAFD LDWQTAAARS TKAKFDQNSN HPQMPPVLQV 420 THLPFSPRHH HQFLSNGDPG TAGGLSLTIG AGMAGHWPPQ QQQGWGNAGG MSWPLPPHPP 480 PPPTNAAAAA TATAAAASSR FPPYIATQAS TWLQKNGFHS LTRPT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FO082280 | 0.0 | FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636848.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Swissprot | B8AVJ9 | 0.0 | APL25_ORYSI; APETALA2-like protein 5 | ||||
TrEMBL | A0A0E0PEX4 | 0.0 | A0A0E0PEX4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G29120.4 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36920.2 | 5e-69 | AP2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|