PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G29120.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 492aa MW: 51708.1 Da PI: 8.1311 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.6 | 2.7e-07 | 161 | 182 | 1 | 22 |
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 s+y+GV++++++grW+++I+ + ORUFI04G29120.6 161 SQYRGVTFYRRTGRWESHIWAY 182 78*****************984 PP | |||||||
2 | AP2 | 46.2 | 1.1e-14 | 234 | 284 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+a+++a+ k +g ORUFI04G29120.6 234 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 284 89********.7******5553..2.26**********************99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.86E-5 | 161 | 200 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-7 | 162 | 205 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-10 | 234 | 284 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.03E-24 | 234 | 294 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-18 | 234 | 294 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.0E-33 | 235 | 298 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.489 | 235 | 292 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-17 | 235 | 292 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MRSSSSKATP TTSPAFRVLC SPPSAKSPRP NKGEDGGGEA EASHRRGKGD AMWDLNDSPA 60 AEAAPPPLSP SADDSGASSS SAAAVVEIPD DADDDSAAVV VVTRQFFPPA VPGGGGDPAP 120 GNARAGWLRL AGAAPPVAAT GPAASAAVSK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW 180 AYDRAAIKFR GVEADINFSL EDYEDDLKQM SNLTKEEFVH VLRRQSTGFP RGSSKYRGVT 240 LHKCGRWEAR MGQFLGKKYV YLGLFDTEEE AARAYDRAAI KCNGKDAVTN FDPSIYAGEF 300 EPPAAATGDA AEHNLDLSLG SSAGSKRGNV DGGGDDEITG GGGGGAGSDQ RVPMAFDLDW 360 QTAAARSTKA KFDQNSNHPQ MPPVLQVTHL PFSPRHHHQF LSNGDPGTAG GLSLTIGAGM 420 AGHWPPQQQQ GWGNAGGMSW PLPPHPPPPP TNAAAAATAT AAAASSRFPP YIATQASTWL 480 QKNGFHSLTR PT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082280 | 0.0 | FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636848.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Swissprot | B8AVJ9 | 0.0 | APL25_ORYSI; APETALA2-like protein 5 | ||||
TrEMBL | A0A0E0PEX3 | 0.0 | A0A0E0PEX3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G29120.4 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 3e-76 | AP2 family protein |
Publications ? help Back to Top | |||
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