PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G29120.4
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 544aa    MW: 57653 Da    PI: 8.9219
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G29120.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37.1e-17161210155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  ORUFI04G29120.4 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 210
                      78*******************......55************************997 PP
2AP226.41.7e-083013361155
              AP2  11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++  ++++         +++++lg f+t+eeAa+a+++a+ k +g
  ORUFI04G29120.4 301 SSCGFLVH---------CRYVYLGLFDTEEEAARAYDRAAIKCNG 336
                      23334444.........6**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-9161210IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-15161219IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-17162218IPR001471AP2/ERF domain
SMARTSM003801.8E-31162224IPR001471AP2/ERF domain
PROSITE profilePS5103217.701162218IPR001471AP2/ERF domain
PfamPF008471.1E-6253336IPR001471AP2/ERF domain
CDDcd000184.79E-19253346No hitNo description
Gene3DG3DSA:3.30.730.107.4E-14254275IPR001471AP2/ERF domain
SMARTSM003807.3E-26254350IPR001471AP2/ERF domain
PROSITE profilePS5103215.251254344IPR001471AP2/ERF domain
PRINTSPR003677.8E-6255266IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-10307346IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-14308344IPR001471AP2/ERF domain
PRINTSPR003677.8E-6326346IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MRSSSSKATP TTSPAFRVLC SPPSAKSPRP NKGEDGGGEA EASHRRGKGD AMWDLNDSPA  60
AEAAPPPLSP SADDSGASSS SAAAVVEIPD DADDDSAAVV VVTRQFFPPA VPGGGGDPAP  120
GNARAGWLRL AGAAPPVAAT GPAASAAVSK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW  180
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFSLE DYEDDLKQMS NLTKEEFVHV  240
LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVL IDHRFFLFRS IVRSWAISRK  300
SSCGFLVHCR YVYLGLFDTE EEAARAYDRA AIKCNGKDAV TNFDPSIYAG EFEPPAAATG  360
DAAEHNLDLS LGSSAGSKRG NVDGGGDDEI TGGGGGGAGS DQRVPMAFDL DWQTAAARST  420
KAKFDQNSNH PQMPPVLQVT HLPFSPRHHH QFLSNGDPGT AGGLSLTIGA GMAGHWPPQQ  480
QQGWGNAGGM SWPLPPHPPP PPTNAAAAAT ATAAAASSRF PPYIATQAST WLQKNGFHSL  540
TRPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822800.0FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636848.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AVJ90.0APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A0E0PEX10.0A0A0E0PEX1_ORYRU; Uncharacterized protein
STRINGORUFI04G29120.40.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.28e-83AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]