PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G29120.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 511aa MW: 53670.3 Da PI: 8.0461 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.5e-17 | 161 | 210 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g ORUFI04G29120.2 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 210 78*******************......55************************997 PP | |||||||
2 | AP2 | 46.2 | 1.2e-14 | 253 | 303 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+a+++a+ k +g ORUFI04G29120.2 253 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 303 89********.7******5553..2.26**********************99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-15 | 161 | 219 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.0E-9 | 161 | 210 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-17 | 162 | 218 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.701 | 162 | 218 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-31 | 162 | 224 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.17E-25 | 253 | 313 | No hit | No description |
SuperFamily | SSF54171 | 2.29E-18 | 253 | 313 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-10 | 253 | 303 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-17 | 254 | 311 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.489 | 254 | 311 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-33 | 254 | 317 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MRSSSSKATP TTSPAFRVLC SPPSAKSPRP NKGEDGGGEA EASHRRGKGD AMWDLNDSPA 60 AEAAPPPLSP SADDSGASSS SAAAVVEIPD DADDDSAAVV VVTRQFFPPA VPGGGGDPAP 120 GNARAGWLRL AGAAPPVAAT GPAASAAVSK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW 180 DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFSLE DYEDDLKQMS NLTKEEFVHV 240 LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEEEA ARAYDRAAIK 300 CNGKDAVTNF DPSIYAGEFE PPAAATGDAA EHNLDLSLGS SAGSKRGNVD GGGDDEITGG 360 GGGGAGSDQR VPMAFDLDWQ TAAARSTKAK FDQNSNHPQM PPVLQVTHLP FSPRHHHQFL 420 SNGDPGTAGG LSLTIGAGMA GHWPPQQQQG WGNAGGMSWP LPPHPPPPPT NAAAAATATA 480 AAASSRFPPY IATQASTWLQ KNGFHSLTRP T |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082280 | 0.0 | FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636848.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Swissprot | B8AVJ9 | 0.0 | APL25_ORYSI; APETALA2-like protein 5 | ||||
TrEMBL | A0A0E0PEW9 | 0.0 | A0A0E0PEW9_ORYRU; Uncharacterized protein | ||||
STRING | ORGLA04G0237800.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 6e-90 | AP2 family protein |
Publications ? help Back to Top | |||
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