PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G27800.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 763aa    MW: 83191 Da    PI: 5.6091
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G27800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.7e-20102158157
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  ORUFI04G27800.1 102 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 158
                      688999************************************************995 PP
2START2046.2e-642925171206
                      HHHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-S CS
            START   1 elaeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetla 77 
                      ela +a++elv++a+++ep+W+  +         e + ++e+ + f+++ +      ++ea+r+s+vv+m++a+lve+l+d ++    +++ + 
  ORUFI04G27800.1 292 ELAVAAMEELVRMAQLDEPLWSVAPpldataaamETLSEEEYARMFPRGLGpkqygLRSEASRDSAVVIMTHANLVEILMDANQyaaVFSNIVS 385
                      57899********************9**999999899999999999887779*******************************66666666666 PP

                      EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
            START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                      +a tlev+s+g      galq+m+ e+q++splvp R+++fvRy++q  +g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skv
  ORUFI04G27800.1 386 RAITLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKV 475
                      *****************************************************************98....7********************** PP

                      EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      twvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+
  ORUFI04G27800.1 476 TWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 517
                      ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-2282157IPR009057Homeodomain-like
SuperFamilySSF466896.27E-2089159IPR009057Homeodomain-like
PROSITE profilePS5007117.0799159IPR001356Homeobox domain
SMARTSM003892.3E-20100163IPR001356Homeobox domain
CDDcd000861.28E-19101160No hitNo description
PfamPF000466.2E-18102157IPR001356Homeobox domain
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PROSITE profilePS5084841.609283520IPR002913START domain
SuperFamilySSF559618.79E-35285519No hitNo description
CDDcd088754.61E-120287516No hitNo description
SMARTSM002341.0E-58292517IPR002913START domain
PfamPF018525.5E-54293517IPR002913START domain
Gene3DG3DSA:3.30.530.207.0E-6358513IPR023393START-like domain
SuperFamilySSF559613.66E-12538753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MERREIFQVA DLAHILRGKP VDHLQQPNLL DNHQFQQAFQ HQQQQHHLLD QIPATTAESG  60
DNMIRSRASD PLGGDEFESK SGSENVDGVS VDDQDPNQRP RKKRYHRHTQ HQIQEMEAFF  120
KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKNQH ERHENSQLRS DNEKLRAENM  180
RYKEALSSAS CPNCGGPAAL GEMSFDEHHL RIENARLREE IDRISAIAAK YVGKPMVPFP  240
VLSNPMAAAA SRAPLDLPVA PYGVPGDMFG GGGAGELLRG VQSEVDKPMI VELAVAAMEE  300
LVRMAQLDEP LWSVAPPLDA TAAAMETLSE EEYARMFPRG LGPKQYGLRS EASRDSAVVI  360
MTHANLVEIL MDANQYAAVF SNIVSRAITL EVLSTGVAGN YNGALQVMSV EFQVPSPLVP  420
TRESYFVRYC KQNADGTWAV VDVSLDSLRP SPVLKCRRRP SGCLIQEMPN GYSKVTWVEH  480
VEVDDRSVHN IYKLLVNSGL AFGARRWVGT LDRQCERLAS VMASNIPTSD IGVITSSEGR  540
KSMLKLAERM VVSFCGGVTA SVAHQWTTLS GSGAEDVRVM TRKSVDDPGR PPGIVLNAAT  600
SFWLPWDILS NGGIVQEMAH IANGRDQGNC VSLLRVNSSN SNQSNMLILQ ESCTDASGSY  660
VIYAPVDVVA MNVVLNGGDP DYVALLPSGF AILPDGPAHD GGDGDGGVGV GSGGSLLTVA  720
FQILVDSVPT AKLSLGSVAT VNSLIACTVE RIKAAVSGES NPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016450.0AB101645.1 Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636340.10.0homeobox-leucine zipper protein ROC2 isoform X2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A0E0PEE90.0A0A0E0PEE9_ORYRU; Uncharacterized protein
STRINGORUFI04G27800.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]