PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G27110.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 258aa    MW: 29317.1 Da    PI: 8.6276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G27110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.91.6e-1794140455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  ORUFI04G27110.1  94 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 140
                      59*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-1987147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.52790139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-2193166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-1793144No hitNo description
PfamPF000108.8E-1595140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1896145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEGIIKIDKA LTTLNSEETI YASYCTLTNS FFASQVRAIT YSKASLGLDQ LAAIGSLYQF  60
IRGGGEGKEA ASQEEEQTPK LRPTPTRRSR SAEFHNFSER RRRDRINEKL KALQELLPNC  120
TKTDKVSMLD EAIDYLKSLQ LQLQMLVMGK GMAPVVPPEL QQYMHYITAD PSQIPPIRPS  180
EPRPFQITHA TQQRQSNVES DFLSQMQNLH PSEPPQNFLR PPKLQLYTPE QQRRGLASSS  240
GHNSGWITER NSSYNFLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066890.0AK106689.1 Oryza sativa Japonica Group cDNA clone:002-114-C05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634978.11e-129transcription factor PIF1
RefseqXP_015634980.11e-129transcription factor PIF1
TrEMBLA0A0E0PE510.0A0A0E0PE51_ORYRU; Uncharacterized protein
STRINGORUFI04G27110.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-31phytochrome interacting factor 3-like 5