PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G25160.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 332aa    MW: 35018.7 Da    PI: 6.6239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G25160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-1393144155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+i+  A++++k+L+
  ORUFI04G25160.1  93 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRGDQASIVGGAIDFVKELE 144
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-1891168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-1491148No hitNo description
Gene3DG3DSA:4.10.280.101.0E-1391148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.23792143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1093144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1098149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALDTLCSAG GDVLIYDTFN ASAAAAAAVV PPASFLFGNN NAGGAAGTET RVQVAAGAVP  60
EVDQLLKQAQ QPGRRKRRRR ARSCKSREDA ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP  120
ESYVHRGDQA SIVGGAIDFV KELEQLLQSL EAQKRTLLMQ PPPPPQQQRE PKCDAADSTS  180
AADQETPAAA AAAAAADGPP FARFFTYPQY VWCHNPAQDG GGGGGAAAEN RAGVADIEVS  240
LVETHASIRV MAARRPGQLL KMVAGLQALR LTVLHLNVTA LGSLALYSIS VKVEEGCGMA  300
TVDDIAAAVH HVLCIIDAEA ASQMLLAGEA SG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379RRKRRRR
27478RKRRR
37481RKRRRRAR
493104RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629810.0AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637096.10.0transcription factor bHLH94
SwissprotQ9C7T42e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0PDD40.0A0A0E0PDD4_ORYRU; Uncharacterized protein
STRINGORUFI04G25160.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]