PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI04G24570.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 317aa MW: 32863.8 Da PI: 4.943

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI04G24570.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	93.7	1.2e-29	87	173	1	83
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+kv tpsdv+k++rlv+pk++ae++ + +e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F ORUFI04G24570.1 87 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFC 173 89*************************955556889*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.4E-40	78	175	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.89E-29	84	174	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.22E-25	85	172	No hit	No description
SMART	SM01019	3.6E-19	87	183	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.592	87	194	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-26	87	173	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MEQEQDEEEE EAEASPREIP FMTSAAAAAT ASSSSPTSVS PSATASAAAS TSASGSPFRS 60 SDGAGASGSG GGGGGEDVEV IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSAAN 120 EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAEAX 180 DGDSSAPALA TAAVATSASS PTPHYGAPPE PLTAGLPMVV DSVPHVNNPA AASKRVRLFG 240 VNLDNPHPDG GQSSSGHDAN ALSLRMPGWQ RPAPLRSLEL PPHMPAGAAG AESSAASSPS 300 SSSSSKREAH SSLDLDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-56	82	179	3	100	B3 domain-containing transcription factor NGA1
5os9_B	3e-56	82	179	3	100	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606688	0.0	AL606688.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence.
GenBank	AL662987	0.0	AL662987.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CR855233	0.0	CR855233.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0303A11-B0406H05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015691551.1	1e-115	PREDICTED: B3 domain-containing protein Os04g0581400-like
Swissprot	Q7F9W2	1e-125	Y4814_ORYSJ; B3 domain-containing protein Os04g0581400
TrEMBL	A0A0E0PD60	0.0	A0A0E0PD60_ORYRU; Uncharacterized protein
STRING	ORUFI04G24570.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	1e-54	B3 family protein

Publications ? help Back to Top
Je BI, et al. RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice. Plant Cell, 2010. 22(6): p. 1777-91 [PMID:20581303]