PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI04G23720.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 836aa MW: 89036.7 Da PI: 5.8207

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI04G23720.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	70.8	1.6e-22	122	177	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k ORUFI04G23720.2 122 KKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMK 177 688999***********************************************998 PP
2	START	161.7	5.5e-51	333	567	2	206
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGGCT-TT-S.... CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddkeqWdetla.... 77 la +a++elvk+a+ ++p+W + es+n +e+l +f++ + + +ea+r+sg+v+ + a lve+l+d ++W+ ++ ORUFI04G23720.2 333 LAMSAMDELVKMAQMGDPLWIPGAsvpsspakESLNFEEYLNTFPPCIGvkpegYVSEASRESGIVIIDdGAALVETLMDEVRRWSDMFScmia 426 67899*************9766667999************9999**********998651568***************** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECT CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksn 159 ka+t+e is+g gal lm+aelq+lsplvp R++ f+R+++ql +g+w++vdvS d+ + s + +++lpSg+++++++n ORUFI04G23720.2 427 KASTTEEISTGvagsrnGALLLMQAELQVLSPLVPiREVKFLRFSKQLADGVWAVVDVSADELMRDQGitsasSTANMNCRRLPSGCVLQDTPN 520 ********************************************************9987666666454555689*********** PP CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g kvtwveh++++++++h l+r+l++sgla ga +w atlqrqce+ ORUFI04G23720.2 521 GFVKVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCEC 567 *******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.36E-22	106	177	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-24	108	179	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.366	119	179	IPR001356	Homeobox domain
SMART	SM00389	3.2E-20	120	183	IPR001356	Homeobox domain
CDD	cd00086	1.19E-20	121	177	No hit	No description
Pfam	PF00046	7.8E-20	122	177	IPR001356	Homeobox domain
PRINTS	PR00031	9.1E-5	150	159	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	154	177	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.1E-5	159	175	IPR000047	Helix-turn-helix motif
PROSITE profile	PS50848	42.319	323	570	IPR002913	START domain
SuperFamily	SSF55961	2.61E-23	326	567	No hit	No description
CDD	cd08875	1.97E-104	327	566	No hit	No description
SMART	SM00234	2.8E-40	332	567	IPR002913	START domain
Pfam	PF01852	1.4E-42	333	567	IPR002913	START domain
SuperFamily	SSF55961	1.92E-15	587	801	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence Send to blast
MSFGVGDHFG DGVVPAGMQF PFSGAGPGVF TSSPALSLAL ADAVAGRNSG GGGKMVTAAH 60 GGVGGGGGGG RAKARDALEV ENEMSRSGSD HLDVVSCGDA GGGGGDDDDD EDAEHGNPPK 120 RKKRYHRHTP QQIQELEAMF KECPHPDEKQ RAELSKRLGL EPRQVKFWFQ NRRTQMKMQL 180 ERHENSLLKQ ENDKLRSENL SIREATSNAV CVGCGGPAML GEVSLEEHHL RVENARLKDE 240 LSRVCALAAK FLGKSISVMA PPQMHQPHPV PGSSLELAVG GIGSMPSATM PISTITDFAG 300 AMSSSMGTVI TPMKSEAEPS AMAGIDKSLF LELAMSAMDE LVKMAQMGDP LWIPGASVPS 360 SPAKESLNFE EYLNTFPPCI GVKPEGYVSE ASRESGIVII DDGAALVETL MDEVRRWSDM 420 FSCMIAKAST TEEISTGVAG SRNGALLLMQ AELQVLSPLV PIREVKFLRF SKQLADGVWA 480 VVDVSADELM RDQGITSASS TANMNCRRLP SGCVLQDTPN GFVKVTWVEH TEYDEASVHP 540 LYRPLLRSGL ALGAGRWIAT LQRQCECLAL LMSSIALPEN DSSAIHPEGK RSMLKLARRM 600 TDNFCAGVST SSTREWSKLV GLTGNIGEDV HVMARKSVDE PGTPPGVVLS AATSVWMPVM 660 PERLFNFLHN KGLRAEWDIL SNGGPMQEVT SIAKGQQNGN TVCLLKASSS VPLTKNFTVQ 720 PTKDKQNSML ILQETCADAS GSMVVYAPVD IPAMHLVMSG GDSSCVALLP SGFAILPAGP 780 SIGADHKMGG SLLTVAFQIL ANSQPSAKLT VESVETVSNL ISCTIKKIKT ALHCDV

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence Send to blast

MSFGVGDHFG DGVVPAGMQF PFSGAGPGVF TSSPALSLAL ADAVAGRNSG GGGKMVTAAH  60
GGVGGGGGGG RAKARDALEV ENEMSRSGSD HLDVVSCGDA GGGGGDDDDD EDAEHGNPPK  120
RKKRYHRHTP QQIQELEAMF KECPHPDEKQ RAELSKRLGL EPRQVKFWFQ NRRTQMKMQL  180
ERHENSLLKQ ENDKLRSENL SIREATSNAV CVGCGGPAML GEVSLEEHHL RVENARLKDE  240
LSRVCALAAK FLGKSISVMA PPQMHQPHPV PGSSLELAVG GIGSMPSATM PISTITDFAG  300
AMSSSMGTVI TPMKSEAEPS AMAGIDKSLF LELAMSAMDE LVKMAQMGDP LWIPGASVPS  360
SPAKESLNFE EYLNTFPPCI GVKPEGYVSE ASRESGIVII DDGAALVETL MDEVRRWSDM  420
FSCMIAKAST TEEISTGVAG SRNGALLLMQ AELQVLSPLV PIREVKFLRF SKQLADGVWA  480
VVDVSADELM RDQGITSASS TANMNCRRLP SGCVLQDTPN GFVKVTWVEH TEYDEASVHP  540
LYRPLLRSGL ALGAGRWIAT LQRQCECLAL LMSSIALPEN DSSAIHPEGK RSMLKLARRM  600
TDNFCAGVST SSTREWSKLV GLTGNIGEDV HVMARKSVDE PGTPPGVVLS AATSVWMPVM  660
PERLFNFLHN KGLRAEWDIL SNGGPMQEVT SIAKGQQNGN TVCLLKASSS VPLTKNFTVQ  720
PTKDKQNSML ILQETCADAS GSMVVYAPVD IPAMHLVMSG GDSSCVALLP SGFAILPAGP  780
SIGADHKMGG SLLTVAFQIL ANSQPSAKLT VESVETVSNL ISCTIKKIKT ALHCDV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111914	0.0	AK111914.1 Oryza sativa Japonica Group cDNA clone:J033128F17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637147.1	0.0	homeobox-leucine zipper protein ROC4
Swissprot	Q7Y0V9	0.0	ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBL	A0A0E0PCU7	0.0	A0A0E0PCU7_ORYRU; Uncharacterized protein
STRING	ORUFI04G23720.2	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1203	37	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wei J, et al. GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7. Plant Sci., 2016. 252: p. 133-143 [PMID:27717449] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]