PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G23720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 824aa MW: 87734.2 Da PI: 5.7207 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 70.8 | 1.6e-22 | 122 | 177 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k ORUFI04G23720.1 122 KKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMK 177 688999***********************************************998 PP | |||||||
2 | START | 161.7 | 5.3e-51 | 333 | 567 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGGCT-TT-S.... CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddkeqWdetla.... 77 la +a++elvk+a+ ++p+W + es+n +e+l +f++ + + +ea+r+sg+v+ + a lve+l+d ++W+ ++ ORUFI04G23720.1 333 LAMSAMDELVKMAQMGDPLWIPGAsvpsspakESLNFEEYLNTFPPCIGvkpegYVSEASRESGIVIIDdGAALVETLMDEVRRWSDMFScmia 426 67899***************9766667999****************9999**************998651568********************* PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECT CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksn 159 ka+t+e is+g gal lm+aelq+lsplvp R++ f+R+++ql +g+w++vdvS d+ + s + +++lpSg+++++++n ORUFI04G23720.1 427 KASTTEEISTGvagsrnGALLLMQAELQVLSPLVPiREVKFLRFSKQLADGVWAVVDVSADELMRDQGitsasSTANMNCRRLPSGCVLQDTPN 520 ************************************************************9987666666454555689*************** PP CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g kvtwveh++++++++h l+r+l++sgla ga +w atlqrqce+ ORUFI04G23720.1 521 GFVKVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCEC 567 *********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.36E-22 | 106 | 177 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 108 | 179 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.366 | 119 | 179 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-20 | 120 | 183 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.16E-20 | 121 | 177 | No hit | No description |
Pfam | PF00046 | 7.6E-20 | 122 | 177 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 8.9E-5 | 150 | 159 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 154 | 177 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.9E-5 | 159 | 175 | IPR000047 | Helix-turn-helix motif |
PROSITE profile | PS50848 | 42.319 | 323 | 570 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.47E-23 | 326 | 567 | No hit | No description |
CDD | cd08875 | 1.84E-104 | 327 | 566 | No hit | No description |
SMART | SM00234 | 2.8E-40 | 332 | 567 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-42 | 333 | 567 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.85E-17 | 587 | 789 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 824 aa Download sequence Send to blast |
MSFGVGDHFG DGVVPAGMQF PFSGAGPGVF TSSPALSLAL ADAVAGRNSG GGGKMVTAAH 60 GGVGGGGGGG RAKARDALEV ENEMSRSGSD HLDVVSCGDA GGGGGDDDDD EDAEHGNPPK 120 RKKRYHRHTP QQIQELEAMF KECPHPDEKQ RAELSKRLGL EPRQVKFWFQ NRRTQMKMQL 180 ERHENSLLKQ ENDKLRSENL SIREATSNAV CVGCGGPAML GEVSLEEHHL RVENARLKDE 240 LSRVCALAAK FLGKSISVMA PPQMHQPHPV PGSSLELAVG GIGSMPSATM PISTITDFAG 300 AMSSSMGTVI TPMKSEAEPS AMAGIDKSLF LELAMSAMDE LVKMAQMGDP LWIPGASVPS 360 SPAKESLNFE EYLNTFPPCI GVKPEGYVSE ASRESGIVII DDGAALVETL MDEVRRWSDM 420 FSCMIAKAST TEEISTGVAG SRNGALLLMQ AELQVLSPLV PIREVKFLRF SKQLADGVWA 480 VVDVSADELM RDQGITSASS TANMNCRRLP SGCVLQDTPN GFVKVTWVEH TEYDEASVHP 540 LYRPLLRSGL ALGAGRWIAT LQRQCECLAL LMSSIALPEN DSSAIHPEGK RSMLKLARRM 600 TDNFCAGVST SSTREWSKLV GLTGNIGEDV HVMARKSVDE PGTPPGVVLS AATSVWMPVM 660 PERLFNFLHN KGLRAEWDIL SNGGPMQEVT SIAKGQQNGN TVCLLKASPT KDKQNSMLIL 720 QETCADASGS MVVYAPVDIP AMHLVMSGGD SSCVALLPSG FAILPAGPSI GADHKMGGSL 780 LTVAFQILAN SQPSAKLTVE SVETVSNLIS CTIKKIKTAL HCDV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111914 | 0.0 | AK111914.1 Oryza sativa Japonica Group cDNA clone:J033128F17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637147.1 | 0.0 | homeobox-leucine zipper protein ROC4 | ||||
Swissprot | Q7Y0V9 | 0.0 | ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4 | ||||
TrEMBL | A0A0E0PCU6 | 0.0 | A0A0E0PCU6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G23720.2 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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