PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI04G23630.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 352aa MW: 35054.8 Da PI: 8.4818

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI04G23630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	48	109	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss ORUFI04G23630.1 48 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 109 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	44	106	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	50	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MEEMLMAANA AAGANPNPAA TAPAGGGPPP VAGGAGAGST ERRARPQKEK ALNCPRCNST 60 NTKFCYYNNY SLQQPRYFCK TCRRYWTEGG SLRNVPVGGG SRKNKRSSSS AASASPASAS 120 TANSVVTSAS MSMSMASTGG GASKNPKLVH EGAQDLNLAF PHHGGLQAPG EFPAFPSLES 180 SSVCNPGGPM GTNGRGGGAL SAMELLRSTG CYMPLQVPMQ MPAEYATPGF ALGEFRAPPP 240 PPQSSQSLLG FSLDAHGSVG GPSAAGFGSS AGLQGVPEST GRLLFPFEDL KPTVSSGTGG 300 GGASGGGAGV DGGHQFDHGK EQQAGGGGGG PGGHDTPGFW NGMIGGGSGT SW

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MEEMLMAANA AAGANPNPAA TAPAGGGPPP VAGGAGAGST ERRARPQKEK ALNCPRCNST  60
NTKFCYYNNY SLQQPRYFCK TCRRYWTEGG SLRNVPVGGG SRKNKRSSSS AASASPASAS  120
TANSVVTSAS MSMSMASTGG GASKNPKLVH EGAQDLNLAF PHHGGLQAPG EFPAFPSLES  180
SSVCNPGGPM GTNGRGGGAL SAMELLRSTG CYMPLQVPMQ MPAEYATPGF ALGEFRAPPP  240
PPQSSQSLLG FSLDAHGSVG GPSAAGFGSS AGLQGVPEST GRLLFPFEDL KPTVSSGTGG  300
GGASGGGAGV DGGHQFDHGK EQQAGGGGGG PGGHDTPGFW NGMIGGGSGT SW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028129	0.0	AB028129.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-18.
GenBank	AL662954	0.0	AL662954.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637008.1	1e-168	dof zinc finger protein 1 isoform X1
Refseq	XP_015637009.1	1e-168	dof zinc finger protein 1 isoform X2
Swissprot	Q9SXG8	1e-169	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A0E0PCT5	0.0	A0A0E0PCT5_ORYRU; Uncharacterized protein
STRING	ORUFI04G23630.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	8e-43	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]