PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G23520.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 644aa    MW: 66668.1 Da    PI: 8.5086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G23520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05128150123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  ORUFI04G23520.1 128 FVCEVCNKGFQREQNLQLHRRGH 150
                      89*******************88 PP
2zf-C2H211.50.00096205227123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H + +
  ORUFI04G23520.1 205 WKCDKCSKRYAVQSDWKAHSKIC 227
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.0E-6127150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.07E-7127150No hitNo description
SMARTSM003550.0041128150IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094128150IPR007087Zinc finger, C2H2
PfamPF121714.3E-5128150IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-4193226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.07E-7200225No hitNo description
SMARTSM00355140205225IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGISRDG DQHDQIKPLI SHQQHQHQQQ QLAASLTGVA TAAPTAASSQ  60
GAPPAAPPAK KKRNLPGNPS NQPKYPFTIS AMHAYISVLR DLVSIDWTDP DAEVIALSPK  120
TLLATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PAQAQRRRVY LCPEPTCVHH  180
DPARALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHSKICGTR EYRCDCGTLF  240
SRRDSFITHR AFCDALAQES SRLPPTSLSS LTSHLYGASN AGNMALSLSQ VGSHLTTSLQ  300
DGGGHHHHPS PELLRLGGAG GGGGAGGGSS IAARLDHLLS PSGASAFRPP QPAFFLNAAA  360
AAAATGQDFG DDAGNGQHSF LQAKPFHGLM QLPDLQGNGA GGPGAPGPNL FNLGFFANNG  420
NSSGSSHEHA SQGLMSNDQF SCGAGGGGGS DASAAGIFGG NFVGGDHVSP AGLYNDQAAM  480
LPQMSATALL QKAAQMGATS SANGPGSMFR GFVGSSPHMR PAAQHMDQSD AHLNDLMNSL  540
AGGGVNAAAM FGGTNGGGVP GAGMFDPRLC DIEHEVKFSQ GGGGGGGAGA GTGDGTRDFL  600
GVGGGGIVHG MSTPRGDHHQ SSSDMSSLEA EMKSASSFNG RRMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34201267369Zinc finger protein JACKDAW
5b3h_F6e-34201267369Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1207230.0AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338648.10.0uncharacterized protein LOC542199
RefseqXP_008668634.10.0uncharacterized protein LOC542199 isoform X1
RefseqXP_008668635.10.0uncharacterized protein LOC542199 isoform X1
TrEMBLA0A0E0PCS10.0A0A0E0PCS1_ORYRU; Uncharacterized protein
STRINGORUFI04G23520.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.19e-99indeterminate(ID)-domain 12