PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G22910.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 471aa    MW: 51782.7 Da    PI: 5.051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G22910.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12372416352
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                      ++h + ErrRR+++N+ f  L++llP+      +K++Ka+iL +++ Y+k
  ORUFI04G22910.2 372 KSHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLK 416
                      5899***********************7.....6**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.0E-4720193IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.1E-14368423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.48E-14372416No hitNo description
Gene3DG3DSA:4.10.280.103.1E-13373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10373416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-12375426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MASAPPVQEE ALQPGTNHFR SRLAAAVRSI SWSYTIFWST STSLPGVLTW NDGFYNGEVK  60
TRKISNLEDL TADQLVLRRS EQLRELYYSL LSGECDHRAR KPVAALSPED IADTEWYYVV  120
CMTYAFRPGQ GLPGRSYASN RSVWLCNAQS ADSKTFLRAL LAKTIVCIPF MSGVLELGTT  180
DPVSEDPNLV NRIVAYLKEL QFPICLEVPS STPSLDETED ADTVFDGLIE EHQMVILQGE  240
DELGDVVVAE CETNGANPET ITMETDEFYS LCEELDLDLG SYQLVPTSAR ETVAAAAAAA  300
NDVDGVAYSH ASCFVSWKRA NPAEKVVAVP MTAGIESQKL LKKAVGGGTA WMSNIDDRGS  360
VAITTTPGSN IKSHVMSERR RREKLNEMFL ILKSLLPSVR KVDKASILAE TITYLKVEKS  420
ERAGVQQQGA IALAPNRNWT GEGAVRSPGR RSMRSVSVVV PRRYLVNTVR I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-2051932188Transcription factor MYC3
4rqw_B4e-2051932188Transcription factor MYC3
4rs9_A4e-2051932188Transcription factor MYC3
4yz6_A4e-2051932188Transcription factor MYC3
5t0f_A4e-2051932188Transcription factor MYC3
5t0q_A4e-2051932188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377382ERRRRE
2378383RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0210800.0AB021080.1 Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635094.10.0anthocyanin regulatory R-S protein
SwissprotP135261e-121ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0E0PCH80.0A0A0E0PCH8_ORYRU; Uncharacterized protein
STRINGORUFI04G22910.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-65bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]