PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G22610.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 311aa    MW: 32709.4 Da    PI: 7.69
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G22610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013526223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ C ++F ++  L  H+r+H
  ORUFI04G22610.1  5 TCKLCYRRFGNPRALAGHMRSH 26
                     6********************9 PP
2zf-C2H211.60.00088174196123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F++   L  H  +H
  ORUFI04G22610.1 174 FQCPACKKVFRSYQALGGHRASH 196
                      89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.099426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974427IPR007087Zinc finger, C2H2
SuperFamilySSF576673.67E-7526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139120.0045626IPR007087Zinc finger, C2H2
SuperFamilySSF576673.67E-7169196No hitNo description
PfamPF139121.2E-11173198IPR007087Zinc finger, C2H2
SMARTSM003550.026174196IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286174196IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SMARTSM0035588238258IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-9238259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAKNTCKLCY RRFGNPRALA GHMRSHSVAA SRSQISSTSS ASTSVAVGDD DGGGDAKRPI  60
QGYVLREKPK RRVRLAESDF SDRESETEYY SSPPHGKRAN TGSGDVEQVS SVSDATSEED  120
VALSLMMLSR DTWPATPPPP PPYRLRGAGY DDGSDGGDAP PAPAAAAAQK RTRFQCPACK  180
KVFRSYQALG GHRASHMRGG RGGCCAPPPN PPPSPATPLQ PLPECDGGEE EGAKPHPHEC  240
PYCFRVFASG QALGGHKRSQ LCSAAAAAAS GDDLPAMIKS NGFIDLNLPA PFDDVELSAV  300
SDPFLSSKPG S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16773KPKRRVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066330.0AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634603.20.0zinc finger protein ZAT1
TrEMBLA0A0E0H3Z30.0A0A0E0H3Z3_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PCE50.0A0A0E0PCE5_ORYRU; Uncharacterized protein
TrEMBLA2XW880.0A2XW88_ORYSI; Uncharacterized protein
TrEMBLQ01IM90.0Q01IM9_ORYSA; OSIGBa0143N19.5 protein
STRINGORUFI04G22610.10.0(Oryza rufipogon)
STRINGONIVA04G19260.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-27C2H2-like zinc finger protein