PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G22600.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 611aa    MW: 64301.2 Da    PI: 6.0795
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G22600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-05165182219
                      EETTTTEEESSHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                      +C++Cgk F++++++  H
  ORUFI04G22600.1 165 VCKNCGKEFTSWEHFLEH 182
                      7**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5367698IPR007087Zinc finger, C2H2
SuperFamilySSF576672.56E-67698No hitNo description
SMARTSM003550.967698IPR015880Zinc finger, C2H2-like
PfamPF139120.00517798IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SuperFamilySSF576672.56E-6159183No hitNo description
SMARTSM00355140164184IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141164191IPR007087Zinc finger, C2H2
SuperFamilySSF576679.58E-8322345No hitNo description
PfamPF139123.5E-9323347IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242323350IPR007087Zinc finger, C2H2
SMARTSM003550.13323345IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280325345IPR007087Zinc finger, C2H2
SuperFamilySSF576679.58E-8431458No hitNo description
PfamPF139125.2E-11436459IPR007087Zinc finger, C2H2
SMARTSM003553.7436458IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182436458IPR007087Zinc finger, C2H2
PROSITE patternPS000280438458IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MAVLDLQVQE NSRHCCDREF VTPDGGAHLI GAPISRSNSI PPRRTKRMHH HGQMQPSPSS  60
PRAPPPTAAQ ASGYKHFCRV CNKGFTCGSA LGGHMRAHGV GDGDGLGADD DDDDDDDSLG  120
DEAVRRARGG ADDPWNAGGP SSSGAATHVY ELRTNPNRVT RSRQVCKNCG KEFTSWEHFL  180
EHGKCSSGED DDDEDDVDRS LQPWSPSPEA DGEEDPAPAA GWLKGKRSRR CKGTGVDLSP  240
TPSACAAGEE EDLANCLVML SSSKVDQAGV TEAEQRSSSS ASKEHKRLIT FMEPTTYVLD  300
TVMALPPPAP APQYVSTVPR GMFECKACKK VFSSHQALGG HRASHKKVKG CFAAKLESNA  360
AEVAEPSHHA EVADRSEDNP AKATSDARRN VHASIDGDGN AGTSDAAAEL SMAIVPIEPP  420
VAALAAAPLK KKGKMHECSV CHRLFTSGQA LGGHKRCHWL TSSSADHTAS VPPLADDLVP  480
LSFRPMLDAP EPALDLSIAA NPPLLASAAT VRPKVGGSSF HLDAPPPVYI PSSPAIPSQR  540
NKATATTGSQ NANDAVGLST AAAEDEADST TVKRARLSDL KDVSMAGETT PWLQVGIGSS  600
SRGGADDNDK E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428434LKKKGKM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634601.10.0uncharacterized protein LOC4336604
TrEMBLA0A0E0PCE40.0A0A0E0PCE4_ORYRU; Uncharacterized protein
STRINGORUFI04G22600.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-20C2H2-like zinc finger protein