PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G22410.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 308aa    MW: 32837.2 Da    PI: 6.0007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G22410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-1965114255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f+tae+Aa+a++ a+++++g
  ORUFI04G22410.1  65 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFDTAEMAARAHDVAALAIKG 114
                      69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-2265123IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-3365123IPR001471AP2/ERF domain
PROSITE profilePS5103223.35465122IPR001471AP2/ERF domain
PfamPF008477.5E-1365114IPR001471AP2/ERF domain
SMARTSM003801.5E-3765128IPR001471AP2/ERF domain
CDDcd000181.14E-3166124No hitNo description
PRINTSPR003674.6E-116677IPR001471AP2/ERF domain
PRINTSPR003674.6E-1188104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEQEQVMSQE SNSCTCSSSS NDASSAACSS LNASSPSSVD SGSAGGGGGG GGKKRPRSDH  60
LKHPTYRGVR MRSWGKWVSE IREPRKKSRI WLGTFDTAEM AARAHDVAAL AIKGRTAHLN  120
FPDLAHLLPR AASASPKDVQ AAAALAAATA SPAPALSPTP CHDVDAAADD EPEPAEPEQA  180
TAPVCIVENG TLQQDGGTGL DYTYFTMPDA LLEFGFTLPP PPPPYYCGSP WDDDAHDDFF  240
FGEPLVLKSL EAAHGSSRVG AERLADSPES GNGHWIHPSC HHHRQILAHQ GGWEVERRWD  300
PRGRWKGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17621221172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880927.11e-111ethylene-responsive transcription factor ERF039
TrEMBLA0A0E0PCC40.0A0A0E0PCC4_ORYRU; Uncharacterized protein
STRINGORUFI04G22410.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.14e-42ERF family protein