PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G22240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 318aa MW: 33784.6 Da PI: 4.8754 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.3e-20 | 139 | 190 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g r++lg+++t+ eAa+a+++a+ +++g+ ORUFI04G22240.1 139 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 190 8********.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-32 | 138 | 198 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.40E-29 | 139 | 198 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-22 | 139 | 198 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-14 | 139 | 189 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.144 | 139 | 197 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-37 | 139 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-13 | 140 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-13 | 179 | 199 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDFPGDAEDF ALEFIHEHLL GGDAPVLPPA AVPAAAAYPP TSTMFLPQQQ RGYAGLTPQE 60 YVVDSAPAAD QAAFRDDQPD PAADVMIMFG GERFPAVKPS SSSSPSLTVT VPPSSFGSWA 120 PAAVPAVAAT AAAVEDFRKY RGVRQRPWGK FAAEIRDPKR RGSRVWLGTY DTPVEAARAY 180 DRAAFRMRGA KAILNFPNEV GTRGAELWAT PPPTNKRKRQ PEDDTAAADD VEVIGVANKA 240 VKTEAPTSAY SSSSLSSMSR DTTATTSSAG TSTGSSEPTS FPVVTPSSWS WDQYWDGLPP 300 LSPLSPHPAL GFPQLTVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-26 | 138 | 202 | 4 | 68 | ATERF1 |
3gcc_A | 2e-26 | 138 | 202 | 4 | 68 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL607006 | 0.0 | AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence. | |||
GenBank | AL731613 | 0.0 | AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635244.1 | 0.0 | ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A0E0PCA5 | 0.0 | A0A0E0PCA5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G22240.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-32 | ethylene responsive element binding factor 5 |