PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G21880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 739aa MW: 80052 Da PI: 6.6926 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 100.2 | 1.6e-31 | 99 | 183 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f++lea ORUFI04G21880.1 99 RWPREETLALIRIRSEMDATFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTELEA 183 8*********************************************************************866665..******985 PP | |||||||
2 | trihelix | 107.8 | 7.3e-34 | 491 | 575 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r e++ r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+ ORUFI04G21880.1 491 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLD 575 8*********************************************************************8.99**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.189 | 92 | 156 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.1E-4 | 96 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 3.4E-22 | 98 | 184 | No hit | No description |
CDD | cd12203 | 5.71E-30 | 98 | 163 | No hit | No description |
PROSITE profile | PS50090 | 7.805 | 484 | 548 | IPR017877 | Myb-like domain |
SMART | SM00717 | 8.3E-6 | 488 | 550 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 6.8E-23 | 490 | 576 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-4 | 490 | 547 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 2.80E-29 | 491 | 555 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MQQHQGGGSQ YGAVPPDMGP FSPTHHASAP APLPLSSRPP PAALSQPPPP QQQQQQPRTS 60 YDELAAATSA GAGGFPDDDM LGDAGGSGGG GGSGAAGNRW PREETLALIR IRSEMDATFR 120 DATLKGPLWE EVSRKLAELG YKRSAKKCKE KFENVHKYYK RTKEGRAGRQ DGKSYRFFTE 180 LEALHAAAPQ TPQPQQQQQQ QLPPVTSSAP AMHAFAPPVP APPPMSAMPP PPGPIQPAPI 240 SSAAPAVPLE LPPQPPINLQ GLSFSSMSGS ESDDESEDDE MTAETGGSQD RLGKRKRGAG 300 GKRLATFFEG LIKQVVDRQE EMQRRFLETM EKREAERTAR EEAWRRQEVA RLNREQEQLA 360 QERAAAASRD AAIISFLQRI GGQSVQVPPA ATVIQMPTPV QLQTPPPVKQ PARQHQPQPT 420 PPPPQAAPIP AAPLQQQPPQ PQHKETIHHE AVTPRRAPPT SGSSLELVPA AEQHVESGLG 480 GGEGGSASSS RWPKTEVQAL IQLRMELDMR YQETGPKGPL WEEISSGMRR LGYNRSSKRC 540 KEKWENINKY FKKVKESNKK RPEDSKTCPY FHQLDVIYRR KHLTGGGGGG ASAANVAATA 600 IEHQNPNRHE IEGKNINDND KRKNGGGGGA QVPTSNGDTA PTTATFDVDS GMKKPEDIVR 660 ELSEQPPREF TTDETDSDDM GDDYTDDGEE GEDDGKMQYR IQFQRPNPGG ANTAPPPATT 720 PASAVPTSTP TSTFLAMVQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 149 | KRSAKKCKE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X68261 | 0.0 | X68261.1 O.sativa gt-2 gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637050.1 | 0.0 | trihelix transcription factor GTL1 isoform X2 | ||||
TrEMBL | A0A0E0PC57 | 0.0 | A0A0E0PC57_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8ASL5 | 0.0 | B8ASL5_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q01IP4 | 0.0 | Q01IP4_ORYSA; H0115B09.8 protein | ||||
TrEMBL | Q7XR86 | 0.0 | Q7XR86_ORYSJ; OSJNBa0011L07.15 protein | ||||
STRING | ORUFI04G21880.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 8e-48 | Trihelix family protein |