PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G21580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 331aa    MW: 37516.2 Da    PI: 6.3912
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G21580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.49.1e-5671361129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeelv++yL+kkv+ kk++l +vik++d+yk+ePwdL++  k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+
  ORUFI04G21580.1   7 VPPGFRFHPTDEELVDYYLRKKVALKKIDL-DVIKDIDLYKIEPWDLQEqcKIGNeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKP 99 
                      69****************************.9***************952444442555*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +++ k+ lvg++ktLvfy+grap+g+k+dW+mheyrle
  ORUFI04G21580.1 100 IYV-KNCLVGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 136
                      ***.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-605156IPR003441NAC domain
PROSITE profilePS5100559.2257156IPR003441NAC domain
PfamPF023652.7E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDAFSHVPPG FRFHPTDEEL VDYYLRKKVA LKKIDLDVIK DIDLYKIEPW DLQEQCKIGN  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKNCLVGMR KTLVFYRGRA  120
PNGQKSDWIM HEYRLETNEY GAPQEEGWVV CRVFKKRVAT VQRAAGDGGD SPFWFNEHVA  180
FMAPAPGLDS PYHGHRQSHP CKLEVEYHHH LLPQEAAPFM HLPRLESPKL PAADIIGATA  240
ASSALQPCGH TTAQQLQLQI EPVYVTADAS AADWRDLDKL VASQFGHGDS TAKEPSYCNP  300
VQVFQVEGKQ EDSLDYVSTS ASCGGEEDLW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-49615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340750.0JN634075.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634595.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-118NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A0D3FYD90.0A0A0D3FYD9_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZNK50.0A0A0D9ZNK5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PC260.0A0A0E0PC26_ORYRU; Uncharacterized protein
STRINGOGLUM04G19900.10.0(Oryza glumipatula)
STRINGORUFI04G21580.10.0(Oryza rufipogon)
STRINGOBART04G20020.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.16e-98NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]