PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G20430.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 687aa    MW: 74278.7 Da    PI: 6.3124
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G20430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.44.1e-21120214899
                      -HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   8 sdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      sd+++ g +++p+ +ae++       ++++ +   +  +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+  ++++++ +v
  ORUFI04G20430.1 120 SDANNGGGFSVPRFCAETIfpeldysSEPPVQ--SVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFM--RDEGGNIHV 209
                      68888999*****999999****987556666..5************************************************..5699***** PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +++r+
  ORUFI04G20430.1 210 GLRRA 214
                      **996 PP
2Auxin_resp118.74.8e-39268351183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa++a+t+++Fev+Y+Prast+eF+v+++ v++a+ v++++GmRfkmafetedss++++ +Gtv+gv+++dpvrWp+S+Wr+L+
  ORUFI04G20430.1 268 AATRATTGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQASDPVRWPQSPWRLLQ 351
                      78999*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.4E-13116215IPR003340B3 DNA binding domain
PfamPF023623.5E-19120214IPR003340B3 DNA binding domain
SuperFamilySSF1019361.44E-24120214IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-31120216IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-15120213No hitNo description
PROSITE profilePS5086311.223156215IPR003340B3 DNA binding domain
PfamPF065072.0E-33268351IPR010525Auxin response factor
PROSITE profilePS5174518.88601681IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MLTFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS  60
ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEEAGVS  120
DANNGGGFSV PRFCAETIFP ELDYSSEPPV QSVCAKDVHG VEWTFRHIYR GTPRRHLLTT  180
GWSPFVNKKQ LTAGDSIVFM RDEGGNIHVG LRRAKRGFCS IGGDDESLSS IPGWDQYRGL  240
MRRNATATAT GGRTPPKGKV PPENVLTAAT RATTGQPFEV LYYPRASTPE FCVRAAAVRT  300
AMAVQWCPGM RFKMAFETED SSRISWFMGT VAGVQASDPV RWPQSPWRLL QVTWDEPELL  360
QNVKRVCPWL VELVSSMPNL HLPSFSPPRK KPRNPPYAEL PLEGQIFTGP VFPPNPMAHD  420
HHHHHGFPFL PFPDSSAQPA GIQGARHAQF ASPFPEFHIG NLQPNLMLYA GIRLPPADRA  480
APAPRPPRII ISTDLTIGSP GKPDDAACSP SSGGKKIDDT KPRGFLLFGQ AILTEEQIKN  540
GNSDGRPASP NWDAEKAPNT SEGSDSGVTQ GSPTKNTTPS WSLPYFGGNN ISRASEYELN  600
PGQCKVFVES ETVGRSLDLS ALSSFEELYA CLSDMFSIGS DELRSHLVYR SPAGEVKHAG  660
DEPFCAFVKS ARKLRILTDA GSDNLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-77137233388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1007950.0AK100795.1 Oryza sativa Japonica Group cDNA clone:J023121F07, full insert sequence.
GenBankAL6629580.0AL662958.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence.
GenBankAL7316290.0AL731629.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633845.10.0auxin response factor 10
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A0E0PBN00.0A0A0E0PBN0_ORYRU; Auxin response factor
STRINGORUFI04G20430.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16