PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G19390.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 619aa    MW: 63352.1 Da    PI: 6.8225
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G19390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51.1e-10281337155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  ORUFI04G19390.1 281 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 337
                      57*******************5444.2455535555.7799999*************98 PP
2AP251.32.8e-16380431155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+++++ grW A+I  +     +k ++lg+f t+eeAa+a++ a+ k++g
  ORUFI04G19390.1 380 SKYRGVTRHHQHGRWQARIGRVAG---NKDIYLGTFSTEEEAAEAYDIAAIKFRG 431
                      89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-8281337IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-14281347IPR016177DNA-binding domain
CDDcd000184.42E-16281347No hitNo description
Gene3DG3DSA:3.30.730.102.6E-11282347IPR001471AP2/ERF domain
SMARTSM003809.7E-22282351IPR001471AP2/ERF domain
PROSITE profilePS5103217.108282345IPR001471AP2/ERF domain
PRINTSPR003673.0E-6283294IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-18380441IPR016177DNA-binding domain
CDDcd000183.60E-23380441No hitNo description
PfamPF008471.6E-10380431IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-18381440IPR001471AP2/ERF domain
PROSITE profilePS5103219.401381439IPR001471AP2/ERF domain
SMARTSM003804.3E-34381445IPR001471AP2/ERF domain
PRINTSPR003673.0E-6421441IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MASADNWLGF SLSGQGNPQH HQNGSPSAAG DAAIDISGSG DFYGLPTPDA HHIGMAGEDA  60
PYGVMDAFNR GTHETQDWAM RGLDYGGGSS DLSMLVGSSG GGRRTVAGDG GGEAPKLENF  120
LDGNSFSDVH GQAAGGYLYS GSAVGGAGGY SNGGCGGGTI ELSMIKTWLR SNQSQQQPSP  180
PQHADQGMST DASASSYACS DVLVGSCGGG GGGGAGGTAS SHGQGLALSM STGSVAAAAG  240
GGAVVAAESS SSENKRVDSP GGAVDGAVPR KSIDTFGQRT SIYRGVTRHR WTGRYEAHLW  300
DNSCRREGQS RKGRQGGYDK EDKAARAYDL AALKYWGTTT TTNFPMSNYE KELEEMKHMT  360
RQEYIAHLRR NSSGFSRGAS KYRGVTRHHQ HGRWQARIGR VAGNKDIYLG TFSTEEEAAE  420
AYDIAAIKFR GLNAVTNFDM SRYDVKSILD SSTLPVGGAA RRLKEAEAAA AAAGGGVIVS  480
HLADGGVGGY YYGCGPTIAF GGGGQQPAPL AVHYPSYGQA SGWCKPEQDA VIAAGHCATD  540
LQHLHLGSGG AAATHNFFQQ PASSSAVYGN GGGGGGNAFM MPMGAVVAAA DHGGQSSAYG  600
GGGEGSSWGT TASSTRTRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00368DAPTransfer from AT3G20840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2877260.0AK287726.1 Oryza sativa Japonica Group cDNA, clone: J065138E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635553.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-131BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0E0PB960.0A0A0E0PB96_ORYRU; Uncharacterized protein
STRINGORUFI04G19390.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-115AP2 family protein