PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G18920.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 333aa    MW: 34604.2 Da    PI: 4.8578
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G18920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box248.1e-082056437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                     r C+ ++ + ++lfC+ +  +lC+ C    H g    H
  ORUFI04G18920.1 20 RACDACGGEAARLFCRADAAFLCAGCDARAH-GpgsrH 56
                     68*************************9999.545556 PP
2zf-B_box22.91.7e-0759103341
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  ORUFI04G18920.1  59 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 103
                      679*****************************6688888898877 PP
3CCT67.73.2e-23239282144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  ORUFI04G18920.1 239 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 282
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-91761IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4241761IPR000315B-box-type zinc finger
CDDcd000212.52E-92061No hitNo description
PfamPF006434.7E-62057IPR000315B-box-type zinc finger
PROSITE profilePS5011910.42457104IPR000315B-box-type zinc finger
PfamPF006438.0E-659104IPR000315B-box-type zinc finger
SMARTSM003364.6E-962104IPR000315B-box-type zinc finger
PfamPF062039.4E-18239281IPR010402CCT domain
PROSITE profilePS5101716.876239281IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEGDDKSAVV GGAYWGLAAR ACDACGGEAA RLFCRADAAF LCAGCDARAH GPGSRHARVW  60
LCEVCEHAPA AVTCRADAAA LCAACDADIH SANPLARRHE RLPVAPFFGA LADAPKPGSG  120
AHGGDAAAAD DDGSNDAEAA SWLLPEPDHG QKDGAVGATD ELYADSDPYL DLDFARSMDD  180
IKAIGVQNGP PELDITGGKL FYSDHSMNHS VSSSEAAVVP DAAAGGGAPM PVVSRGRERE  240
ARLMRYREKR KSRRFEKTIR YASRKAYAET RPRIKGRFAK RTKGGAGADA DADADADGED  300
EEMYSSAAAA VAALMAPGGS DADYGVDGVV PTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1210240.0AK121024.1 Oryza sativa Japonica Group cDNA clone:J023049O11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633841.10.0zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A0E0PB250.0A0A0E0PB25_ORYRU; Uncharacterized protein
TrEMBLI1PMN90.0I1PMN9_ORYGL; Uncharacterized protein
TrEMBLQ7XQH70.0Q7XQH7_ORYSJ; OSJNBa0067K08.19 protein
STRINGORUFI04G18920.10.0(Oryza rufipogon)
STRINGOS04T0497700-010.0(Oryza sativa)
STRINGORGLA04G0145800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.14e-48CONSTANS-like 3