PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G18350.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 26314.2 Da PI: 8.9658 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.1 | 5.6e-12 | 170 | 215 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l+P+ +k s +++L +Av++Ik Lq ORUFI04G18350.2 170 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 215 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.215 | 164 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-16 | 167 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.57E-12 | 168 | 219 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-14 | 169 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-9 | 170 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-13 | 170 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MFDGSFSSSA RPAGSSLGEV RHGAMSSSSN NKKKMKAPLS FASSRQGSGG LSQISEDGIP 60 DLTDSIHGAA HHHGRSEENV STHDHVVRSF SSGGFSIGSW EDSNSIVFST STGKSGAHGN 120 DDIIATLSNY ESQLVAPREM AGVEKYLQMQ HDQVPFRVRA KRGCATHPRS IAERERRTRI 180 SEKLRKLQAL VPNMDKQTST SDMLDLAVDH IKGLQSQLQT LKEDKEKCTC SCKQASRNRP 240 AD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068039 | 0.0 | AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636683.1 | 1e-174 | transcription factor bHLH129 | ||||
Swissprot | Q8H102 | 1e-45 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A0E0PAV5 | 1e-179 | A0A0E0PAV5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G18350.1 | 1e-173 | (Oryza rufipogon) | ||||
STRING | OBART04G16900.1 | 1e-174 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 1e-45 | bHLH family protein |
Publications ? help Back to Top | |||
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