PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G17470.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 895aa    MW: 98641.6 Da    PI: 6.4353
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G17470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.76.1e-29592002128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                      p G++F+P+d e++ e+L++k++  +      ++ +   +++v +i++++P++Lp  +k + ++ +fF++ +++y +g+rk+r+          
  ORUFI04G17470.1  59 PDGVKFDPSDLEVL-EHLERKINLGNpgpqglIDHFIPtLEKVeGICYTHPENLP-GIKLDGTSSHFFHRISNAYGSGQRKRRKishtghaasD 150
                      88**********99.99****998887887774444444888878**********.66778899*******************76776666554 PP

              NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      ++ +W++tgk+k++++ +g l+g kk+Lv+ykg +++k ++++Wvmh+y+l
  ORUFI04G17470.1 151 ENIRWHKTGKSKQIYH-NGVLKGWKKILVLYKGsKKNKIVQANWVMHQYNL 200
                      4678************.99************996777889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-3442219IPR003441NAC domain
PROSITE profilePS5100528.47358219IPR003441NAC domain
PfamPF023651.6E-1159200IPR003441NAC domain
PROSITE profilePS513758.912480510IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-4483507IPR002885Pentatricopeptide repeat
PfamPF015358.9E-4483508IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.109.1E-12492600IPR011990Tetratricopeptide-like helical domain
PfamPF130411.5E-16510560IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.134511545IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.8E-9513547IPR002885Pentatricopeptide repeat
SuperFamilySSF819011.99E-8525743No hitNo description
PROSITE profilePS5137512.452547581IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.9E-9549579IPR002885Pentatricopeptide repeat
PfamPF130419.0E-10582629IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.972583617IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-6585617IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.698618652IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.7E-5621654IPR002885Pentatricopeptide repeat
PfamPF130411.7E-17652701IPR002885Pentatricopeptide repeat
PROSITE profilePS5137514.041653687IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.9E-11655687IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.109.1E-12656819IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137511.981688722IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-7690723IPR002885Pentatricopeptide repeat
PfamPF130411.5E-15722770IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.641723757IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-6725758IPR002885Pentatricopeptide repeat
PROSITE profilePS5137514.458758792IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-11760793IPR002885Pentatricopeptide repeat
PfamPF130411.9E-16792841IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.384793827IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.5E-9795828IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.461828862IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-10831863IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MARPWIIAGG KVIATKIRNA TQLLSCKLGE LVPEAWRECP NCKCHIDNSD VTLQWPEFPD  60
GVKFDPSDLE VLEHLERKIN LGNPGPQGLI DHFIPTLEKV EGICYTHPEN LPGIKLDGTS  120
SHFFHRISNA YGSGQRKRRK ISHTGHAASD ENIRWHKTGK SKQIYHNGVL KGWKKILVLY  180
KGSKKNKIVQ ANWVMHQYNL GVEEGGEDGE LVVSKVFYQL SSKQTGTPEM DSVTEEASDA  240
LTIRSDPITP ITNPPLPRCL MNSPCDTEQN GTISHDQEGE CSTSTLRPMV EAGNRAGCSA  300
GASTAGDFNE DLLQRCEFPE DPVPTLDDTL PFLYTDETDL FSWEDFQFGS QESFGWVDGD  360
HTKLTKNPPP KSPTGAPARA SPTSAAALAL FKSALSADKA LSPLAVLPHL DGAPSSLPNL  420
LLTASAAVRP HATSLRLYSR MKSLSLPIST ASLHPLLSAL PSAPAFALFA DMFRLRLPLC  480
TTTFNIMLRH LCSAGKPARA LELLRQMPRP NAVTYNTVIA GFCSRGRVQA ALDIMREMRE  540
RGGIAPNQYT YGTVISGWCK VGRVDEAVKV FDEMLTKGEV KPEAVMYNAL IGGYCDQGKL  600
DTALLYRDRM VERGVAMTIA TYNLLVHALF MDGRGTEAYE LVEEMGGKGL APDVFTYNIL  660
INGHCKEGNV KKALEIFENM SRRGVRATVV TYTSLIYALS KKGQVQETDK LFDEAVRRGI  720
RPDLVLYNAL INSHSTSGNI DRAFEIMGEM EKKRIAPDDV TYNTLMRGLC LLGRVDEARK  780
LIDEMTKRGI QPDLVTYNTL ISGYSMKGDV KDALRIRNEM MNKGFNPTLL TYNALIQGLC  840
KNGQGDDAEN MVKEMVENGI TPDDSTYISL IEGLTTEDER AIDDERLAAA DAAKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A1e-1204448742444pentatricopeptide repeat protein dPPR-U10
5i9h_A1e-1214448742444pentatricopeptide repeat protein dPPR-U8G2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551560.0CR855156.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0116M22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634992.20.0pentatricopeptide repeat-containing protein At2g15630, mitochondrial
TrEMBLA0A0E0PAJ20.0A0A0E0PAJ2_ORYRU; Uncharacterized protein
STRINGORUFI04G17470.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.22e-62pentatricopeptide (PPR) repeat-containing protein