PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G15090.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 427aa MW: 46501 Da PI: 8.7123 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.6 | 3.1e-50 | 10 | 135 | 1 | 125 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+ +yLkkkv +k++l evi+evd++k+ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk ORUFI04G15090.2 10 VPPGFRFHPTDEELLLYYLKKKVGFEKFDL-EVIREVDLNKIEPWDLQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKC 102 69****************************.99**************963433332566*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmhe 125 + + + +++g++ktLvfy+grap+g+ktdW+mhe ORUFI04G15090.2 103 IRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHE 135 **9.8999*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.06E-50 | 5 | 135 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.495 | 10 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-25 | 11 | 135 | IPR003441 | NAC domain |
Pfam | PF08583 | 9.4E-9 | 360 | 412 | IPR013892 | Cytochrome c oxidase biogenesis protein Cmc1-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0010181 | Molecular Function | FMN binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWDLQERCR 60 IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR 120 GRAPHGQKTD WIMHEVFKKK CFFKIGGGGG GEGSGGSQGG DVGGGHLAVS PPLGGGHAMA 180 AASHYMHPHH QYHHHHHAAA ASPFYYTQMP PPPAAAPPHA AYSHHVQVQD LLTNHRPSAD 240 AGYDFSGLPA VDHHHHHPGL DVGSSDGGGG VAAGGGVAAG GADGDQAAAA AAGSTDQQQW 300 QAMDGFSNGG AGAAAAVQQQ LGAMSSGQRG GEMDLWGYGR LTFYIFGNAS PSNLTQASYI 360 IEAFQKCHVD HPVKKFFGEC TDLKIKLDQC FRQEKALKRK ANFEESKKFK EQLLAYKKEM 420 AEQDKES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-43 | 10 | 135 | 17 | 139 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-43 | 10 | 135 | 17 | 139 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-43 | 10 | 135 | 17 | 139 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-43 | 10 | 135 | 17 | 139 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-43 | 10 | 135 | 20 | 142 | NAC domain-containing protein 19 |
3swm_B | 9e-43 | 10 | 135 | 20 | 142 | NAC domain-containing protein 19 |
3swm_C | 9e-43 | 10 | 135 | 20 | 142 | NAC domain-containing protein 19 |
3swm_D | 9e-43 | 10 | 135 | 20 | 142 | NAC domain-containing protein 19 |
3swp_A | 9e-43 | 10 | 135 | 20 | 142 | NAC domain-containing protein 19 |
3swp_B | 9e-43 | 10 | 135 | 20 | 142 | NAC domain-containing protein 19 |
3swp_C | 9e-43 | 10 | 135 | 20 | 142 | NAC domain-containing protein 19 |
3swp_D | 9e-43 | 10 | 135 | 20 | 142 | NAC domain-containing protein 19 |
3ulx_A | 8e-43 | 9 | 135 | 14 | 137 | Stress-induced transcription factor NAC1 |
4dul_A | 6e-43 | 10 | 135 | 17 | 139 | NAC domain-containing protein 19 |
4dul_B | 6e-43 | 10 | 135 | 17 | 139 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC157500 | 0.0 | AC157500.1 Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from chromosome 4, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661033.1 | 1e-173 | protein BEARSKIN1 | ||||
TrEMBL | A0A0E0P9N7 | 0.0 | A0A0E0P9N7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G15090.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33280.1 | 1e-77 | NAC domain containing protein 15 |