PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G14690.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 356aa    MW: 39618.4 Da    PI: 8.9368
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G14690.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06282305126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y+ e Cr++++   C++ ++C+FaH+
  ORUFI04G14690.4 282 YGVEVCRDYLK-NMCNR-ESCRFAHP 305
                      899********.*****.*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.183103131IPR000571Zinc finger, CCCH-type
SMARTSM003560.037103130IPR000571Zinc finger, CCCH-type
PfamPF146080.1109129No hitNo description
PROSITE profilePS5010311.836138165IPR000571Zinc finger, CCCH-type
SMARTSM003560.21138164IPR000571Zinc finger, CCCH-type
PfamPF146083.7150163No hitNo description
PROSITE profilePS5010313.094180208IPR000571Zinc finger, CCCH-type
SMARTSM003560.019181207IPR000571Zinc finger, CCCH-type
SMARTSM003560.73211235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.291215236IPR000571Zinc finger, CCCH-type
PfamPF146082.2216233No hitNo description
Gene3DG3DSA:4.10.1000.106.1E-4280304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338281307IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-4281306IPR000571Zinc finger, CCCH-type
PfamPF146080.013287305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MASAETPNPD AEIPNTDAAA AADPAAAAPA AAATDPAAAG SPSPPLPPRK RRLSPTPSPT  60
RRSSRSRSRS PRRGRSRSRS RSRSRGRSAS PRYPDGKRRR HNDLNVEVCR DFLRDRCARA  120
DIECKYAHPH PTVAVDRDSK VTACADSLRN NCFRGRTCRY YHPPPHIQES LLRSIGVEDP  180
KVKMVCRDFT RGRCSRSANE CRFLHHSPLE DCAIVCQDFL RGRCDRKSCR YSHVMAHPMP  240
PPMRDIPMQY PDMVYMPPPA PLGVPMMMPP PSAPAAFSGN NYGVEVCRDY LKNMCNRESC  300
RFAHPDLNNE FAVILSEENA IDLPVAFTIH LQAQILLDKV NIECPALLPL LPLCCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5u6h_A2e-141041711479Muscleblind-like protein 1
5u9b_A2e-141041711479Muscleblind-like protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17686RSRSRSRSRGR
27886RSRSRSRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606340.0AK060634.1 Oryza sativa Japonica Group cDNA clone:001-027-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636418.10.0zinc finger CCCH domain-containing protein 28 isoform X2
SwissprotQ0JD071e-161C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A0E0P9I10.0A0A0E0P9I1_ORYRU; Uncharacterized protein
STRINGORUFI04G14690.40.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]