PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G14690.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 306aa    MW: 34092.8 Da    PI: 8.1402
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G14690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.7e-07248271126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y+ e Cr++++   C++ ++C+FaH+
  ORUFI04G14690.1 248 YGVEVCRDYLK-NMCNR-ESCRFAHP 271
                      899********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0376996IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1836997IPR000571Zinc finger, CCCH-type
PfamPF146080.0867595No hitNo description
SMARTSM003560.21104130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.836104131IPR000571Zinc finger, CCCH-type
PfamPF146083.1116129No hitNo description
PROSITE profilePS5010313.094146174IPR000571Zinc finger, CCCH-type
SMARTSM003560.019147173IPR000571Zinc finger, CCCH-type
SMARTSM003560.73177201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.291181202IPR000571Zinc finger, CCCH-type
PfamPF146081.8182199No hitNo description
Gene3DG3DSA:4.10.1000.105.0E-4246270IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-4247272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338247273IPR000571Zinc finger, CCCH-type
PfamPF146080.011253271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MASAETPNPD AEIPNTDAAA AADPAAAAPA AAATDPAAAG SPRSRSRSRS RGRSASPRYP  60
DGKRRRHNDL NVEVCRDFLR DRCARADIEC KYAHPHPTVA VDRDSKVTAC ADSLRNNCFR  120
GRTCRYYHPP PHIQESLLRS IGVEDPKVKM VCRDFTRGRC SRSANECRFL HHSPLEDCAI  180
VCQDFLRGRC DRKSCRYSHV MAHPMPPPMR DIPMQYPDMV YMPPPAPLGV PMMMPPPSAP  240
AAFSGNNYGV EVCRDYLKNM CNRESCRFAH PDLNNEFAVI LSEENAIDLP VAFTIHLQAQ  300
ILLDKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3d2n_A6e-1470137772Muscleblind-like protein 1
5u6h_A6e-14701371479Muscleblind-like protein 1
5u9b_A6e-14701371479Muscleblind-like protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14252RSRSRSRSRGR
24452RSRSRSRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606340.0AK060634.1 Oryza sativa Japonica Group cDNA clone:001-027-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636418.11e-151zinc finger CCCH domain-containing protein 28 isoform X2
SwissprotQ0JD071e-151C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A0E0P9H80.0A0A0E0P9H8_ORYRU; Uncharacterized protein
STRINGOMERI04G11120.11e-174(Oryza meridionalis)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]