PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G14390.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 276aa    MW: 28438.4 Da    PI: 8.1815
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G14390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.28.2e-282774557
      ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                     +YkeC++NhAa++Gg+a+DGCgE+mp+     ++++lkCaACgCHR+FHRr  
  ORUFI04G14390.1 27 KYKECMRNHAAAMGGQAFDGCGEYMPA-----SPDSLKCAACGCHRSFHRRAA 74
                     7*************************9.....799****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-182768IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-242773IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-222773IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0482873IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.5E-18144214IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-29145215IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-26156213IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDHLSLVPYE GGSAGGGGGG GGGGGGKYKE CMRNHAAAMG GQAFDGCGEY MPASPDSLKC  60
AACGCHRSFH RRAAAGIGGG PGFFRPPPPP PPHPGHAAPT GVPPQPQPHP HPQHPYLHPP  120
FPYHHTPSGS GGTTTESSSE ERGPPSSSAA AAQGRRKRFR TKFTPEQKER MREFAEKQGW  180
RINRNDDGAL DRFCVEIGVK RHVLKVWMHN HKNQLASSPT SAAAAAAGVM NPGAGIGLGT  240
GLGTGISGDG DGDDDDTDDS PPRAAVSSPS PSPISV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-241572221880ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551530.0CR855153.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0823A09, complete sequence.
GenBankCR8551880.0CR855188.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0102D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635194.12e-86zinc-finger homeodomain protein 8
SwissprotQ7X7N32e-87ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A0E0P9E40.0A0A0E0P9E4_ORYRU; Uncharacterized protein
STRINGORUFI04G14390.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-23homeobox protein 22