PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G14020.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 714aa    MW: 76156 Da    PI: 5.6898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G14020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13133181355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++h   Er RR++++++fe L  l+P++     +K +Ka+i+e +++YIk+Lq
  ORUFI04G14020.1 133 KMHVLTERERRKEMKNKFEILHALIPNL----PEKTDKATIVEATINYIKNLQ 181
                      579999*********************6....39******************9 PP
2HLH34.24.5e-11495538855
                      HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       Er RR+++++ f++L  llPk +     +K +Ka+i+ +A+ YIk L+
  ORUFI04G14020.1 495 TERERRKKMKNMFSTLHGLLPKiP-----GKTDKASIVGEAIGYIKTLE 538
                      7*********************88.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15133195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.46E-14133185No hitNo description
PfamPF000108.6E-11134181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-16134193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-11136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.884487537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-14491548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-13492548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.70E-11492542No hitNo description
PfamPF000101.2E-8495538IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-7495543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MSQEGPNNHP QGTQETHDCP FTIATNTPLG STKMGYSDSR KSDENNTSSK PASPVVSSDV  60
VEIKETWENV VVADEEGEGG EDGFASDASE SKSKSSSDEV DYELLDLLAG ASEGCSGGNN  120
NDEVKNFAYA DHKMHVLTER ERRKEMKNKF EILHALIPNL PEKTDKATIV EATINYIKNL  180
QDKIHKMEML KVEREHAIAL ATAATATAAA SADTALQAPP PSEEENEEHD SVVAAATREM  240
ALADMVHAWE QQQEAAATGG SHGGHAVPPP PPAASLQTWT GPNMTASLTG DDGFITLSLP  300
HQGGQKNLVA GAVSVLERHH IDVVTATVSA SEQGDNLISL HCHLSPGSSS SQNLTPLDKF  360
KLAMSELMLW SQHLHLPIHP MSQEGADLSQ DVDESPYHTA VVTTNNLVRS IKAEKSNSSS  420
SSGKPIETDI GLKVASPTMF GFNTKIEGTG KNMAVKREEG EGGGRPGVSS GVSTRDTNGK  480
GKNAMDMEHA LHIWTERERR KKMKNMFSTL HGLLPKIPGK TDKASIVGEA IGYIKTLEDV  540
VQKLETIKTE RVRAHQWAAA AAAAVAANGG GEGSSHSHSQ PPRHATAVTV AVAEPAPVAA  600
AVNAQEPQKK AAAAAAAPTL QTWSAPNITL TMAGVDAFIN MCLPRQRASF TTVAFVLEKH  660
QIDVVTSTIS ADHDKSLFSV HVRLNEASLQ STEGLTPEAK YKLAVSELMV RLAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072680.0AK107268.1 Oryza sativa Japonica Group cDNA clone:002-125-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636599.10.0transcription factor bHLH95
TrEMBLA0A0E0P9860.0A0A0E0P986_ORYRU; Uncharacterized protein
STRINGORUFI04G14020.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-20bHLH family protein