PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G12740.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 358aa    MW: 38041.9 Da    PI: 7.3146
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G12740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.53.9e-093894961
         trihelix  9 aLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkry 61
                      L++ ++++ e+l+rg+l++ +We+v++++     +    +s +qCk+k++nl+kr+
  ORUFI04G12740.1 38 SLLDSYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKSSGGKSVEQCKNKIDNLKKRH 94
                     699***************************6655344446899************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-93794No hitNo description
Gene3DG3DSA:3.40.1160.101.7E-72114351IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.915116352IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.44E-55116351IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006961.1E-19119331IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.41E-114119352No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MASCDDDFGL LGDGPVPEEE AAAAAASSQA APPPXRRSLL DSYTDRFEQL NRGNLRGRDW  60
EDVAAAVTDG QGKSSGGKSV EQCKNKIDNL KKRHAPSGSS TPTFGGSSRL APPSNPKWKR  120
VLLKIGGTAL AGAPPQNVDP KVIMLIAREV QVACRHGVEV SIVVGGRNIF CGDTWVSATG  180
TDRASTYSIG MMASVMNAVL LQASLEKIGV ETRVQTALMM QEVAEPYIRR RAIRHLEKGR  240
VVIFAGIGAG IGNPLFTTDT AAALRASEIN ADVVLKGTAG DDDYGCPPRG NNNPPFEHIS  300
FRELAARGFS RMDMTAITCC QENNIPVVIF NMLEPGNISK AICGDQVGTL VDQSGRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A2e-631163515238uridylate kinase
1z9d_B2e-631163515238uridylate kinase
1z9d_C2e-631163515238uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087570.0AK108757.1 Oryza sativa Japonica Group cDNA clone:002-150-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637195.10.0uncharacterized protein LOC4335753
SwissprotQ7VD611e-81PYRH_PROMA; Uridylate kinase
TrEMBLA0A0E0P8R00.0A0A0E0P8R0_ORYRU; Uncharacterized protein
STRINGORUFI04G12740.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-104Trihelix family protein