PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G09580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 140aa MW: 15732.1 Da PI: 12.1835 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.5e-15 | 59 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 g+ GV+++ grW AeIrd + ++ r ++g+f+ta eAa a++a ++l+g ORUFI04G09580.1 59 GFLGVHQRT-YGRWSAEIRD----NvIKvSRLWIGTFDTALEAALAYDAVSRRLYG 109 788***999.8*********....77667********************9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.701 | 59 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-17 | 59 | 117 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.5E-16 | 59 | 123 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.94E-18 | 60 | 118 | No hit | No description |
PRINTS | PR00367 | 2.4E-6 | 60 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-22 | 60 | 117 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.6E-8 | 62 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MQVVHQLLNL SQTFRQEHRL SQIRWRLRPG ALALKLASAA AAAARSRRRR RRGEASKHGF 60 LGVHQRTYGR WSAEIRDNVI KVSRLWIGTF DTALEAALAY DAVSRRLYGL NAKTNFAAGE 120 DLPPLPPPPP PMAMRSSVTH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 51 | RRRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR855091 | 0.0 | CR855091.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0130K07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664719.2 | 2e-29 | PREDICTED: ethylene-responsive transcription factor RAP2-2-like | ||||
TrEMBL | A0A0E0P7N2 | 8e-97 | A0A0E0P7N2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G09580.1 | 1e-97 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15980 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22985.1 | 3e-17 | ERF family protein |