PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G08040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 255aa MW: 29549.3 Da PI: 8.864 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.9 | 4.2e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n++nrqvtfskRr g++KKA EL +LCda+v +i+fs tg+ly++ss ORUFI04G08040.1 9 KRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 48.7 | 3.2e-17 | 146 | 213 | 32 | 99 |
K-box 32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++R+llGe++++ ++++Lq L++q+e sl +iR+kK l+ ++ +el+kk + ++++n +L+kkl+ ORUFI04G08040.1 146 VSNKRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKGSLVQKENSELRKKFNIAHQRNIELHKKLN 213 5799*************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.852 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.42E-32 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.01E-41 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.274 | 128 | 218 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.4E-14 | 137 | 212 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRGKIAIKR IDNTMNRQVT FSKRRGGLMK KARELAILCD ADVGLIVFSC TGRLYDFSSS 60 SMKSIIERYQ EAGEEHCRLL NPMSEAKFWQ REVTTLRQQV QNLHHNNSFY LSANYLNENS 120 AYYFIRINQY EGENEIFFKA HVEIHVSNKR QLLGEEISNF TVRDLQLLQN QVEMSLHSIR 180 NKKGSLVQKE NSELRKKFNI AHQRNIELHK KLNSGESTSS EQVTRSSKDP GESSTPRDSR 240 VCIDLELSQK EVEDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-21 | 1 | 76 | 1 | 76 | MEF2C |
5f28_B | 3e-21 | 1 | 76 | 1 | 76 | MEF2C |
5f28_C | 3e-21 | 1 | 76 | 1 | 76 | MEF2C |
5f28_D | 3e-21 | 1 | 76 | 1 | 76 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102927 | 1e-180 | AK102927.1 Oryza sativa Japonica Group cDNA clone:J033114E21, full insert sequence. | |||
GenBank | AY177695 | 1e-180 | AY177695.2 Oryza sativa (japonica cultivar-group) transcription factor MADS25 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635120.1 | 1e-144 | MADS-box transcription factor 25 | ||||
Swissprot | Q84NC5 | 1e-145 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | A0A0E0P735 | 0.0 | A0A0E0P735_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G08040.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 2e-62 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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