PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G07840.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 279aa    MW: 29793.2 Da    PI: 5.3996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G07840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-1392137555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + ++Er RR+r+N++++ Lr ++Pk      +K++Ka+i++ A+ +I +Lq
  ORUFI04G07840.1  92 NIAMERDRRKRLNEKLFALRAVVPKI-----TKMDKASIVRDAIAHIEKLQ 137
                      6789*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.19387136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.64E-1490141No hitNo description
SuperFamilySSF474591.07E-1591156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-1192137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1493142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1494155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEAAADMGVL LDLYWHTPHI FDLAVADSLL MDGFGGGMYG PAAAPATPAM VEKEYDESLS  60
ELYAYTSQSR YADSSSPDVV NLCSTAAASS KNIAMERDRR KRLNEKLFAL RAVVPKITKM  120
DKASIVRDAI AHIEKLQEEE RQLLDEISVL QSAAAVAATA VEDVDDSGVT MPSMKKLRST  180
PPLDGGGGAL RVASSPPLQI LEVSKVGEKT VAVSIRCAKT RGAMAKVCHA VESLHLKVVS  240
ASVAAVDGTI VHTMFVETEQ MSGAQEMKQR IQSSLLSAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316211e-139AL731621.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013O03, complete sequence.
GenBankAP0149601e-139AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633867.11e-180transcription factor bHLH35
TrEMBLA0A0E0P7100.0A0A0E0P710_ORYRU; Uncharacterized protein
STRINGORUFI04G07840.20.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-41bHLH family protein