PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G03370.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 75aa MW: 8408.2 Da PI: 9.8334 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 23.8 | 8.9e-08 | 40 | 64 | 14 | 38 |
TCR 14 lkkYCeCfaagkkCseeCkCedCkN 38 l + CeC ++++ C+ +C+C +C N ORUFI04G03370.3 40 LELVCECLKHEVRCTAKCRCIECGN 64 6778*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03638 | 7.9E-6 | 38 | 64 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MGHARLHFLL FLVSASADCL LRPPLRLRRT SAPLRMSKRL ELVCECLKHE VRCTAKCRCI 60 ECGNGLGIKR GIVSC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 6e-41 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0P5E4 | 4e-45 | A0A0E0P5E4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G03370.2 | 4e-44 | (Oryza rufipogon) |