PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G03150.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 159aa    MW: 17574.8 Da    PI: 8.6201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G03150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.9e-064668123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C + F++   L  H+++H
  ORUFI04G03150.1 46 YTCGYCRREFRSAQALGGHMNVH 68
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.68E-74473No hitNo description
PfamPF139124.1E-64670IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.514673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MESRSAREHG HGHLHQQHQR PWSCSFGFSW PPLQRSPPPS SSSSSYTCGY CRREFRSAQA  60
LGGHMNVHRR ERARLRQFPN PRPHPLPNLN LSPPPPPPPP PPQQQQCYCP GDRPAIVYSF  120
FSTAAAAMAA TKGLEVDLEL GVGGGMEEGL DLELRLGCS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630130.0AL663013.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880331.11e-74transcriptional regulator SUPERMAN
TrEMBLA0A0E0P5B51e-111A0A0E0P5B5_ORYRU; Uncharacterized protein
STRINGORUFI04G03150.11e-112(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-16C2H2 family protein