PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G02810.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 342aa    MW: 35113.7 Da    PI: 5.8883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G02810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00079240262123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F +   L  H+r+H
  ORUFI04G02810.1 240 HECSICGAEFASGQALGGHMRRH 262
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.95E-8131154No hitNo description
PfamPF139126.7E-11131156IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.201132159IPR007087Zinc finger, C2H2
SMARTSM003550.24132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-8235262No hitNo description
PfamPF139121.5E-12239263IPR007087Zinc finger, C2H2
SMARTSM003550.016240262IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263240267IPR007087Zinc finger, C2H2
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGVQEEAALA AAVVKGKRSK RQRAHAAVVP IAASATAEEE ESMESSLSLS GGAAAEGSST  60
TSPLLTTTAA RGDEAVSGCV TEEEEDMALC LMLLASGGHG ERAPDAEAVA AKEAKFRSRR  120
PADGAGAGEF VYECKTCSKC FPSFQALGGH RTSHKKPRLV APPAAMEPAA DDKIKPTIPE  180
TAAAAAEEKP PKPSPPRPPA SRPIATDPTV LAIPVIPKQE VLDATNAAAI ASVSKQPRVH  240
ECSICGAEFA SGQALGGHMR RHRPLIPASA SSAVVSVLDA VDAPRQKEKS LLELDLNMPA  300
PCDDATAETT TTSSAATSPA FAFAVSDRSP LLVPAALVGC HY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4057770.0CU405777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634434.10.0zinc finger protein ZAT5
TrEMBLA0A0E0P5770.0A0A0E0P577_ORYRU; Uncharacterized protein
STRINGORUFI04G02810.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-27C2H2 family protein