PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G00820.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 480aa    MW: 50184.4 Da    PI: 9.7629
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G00820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05242264223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       C+ Cg++F+  ++L++H+   H
  ORUFI04G00820.1 242 ACSQCGEVFNKADSLEHHQAIrH 264
                      6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280241264IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473241269IPR007087Zinc finger, C2H2
SuperFamilySSF563995.32E-17266477No hitNo description
Gene3DG3DSA:3.90.228.106.7E-4400478IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MALSTLLLPS SSSSSSKTAT ATDTSDRRRH HHHHNHTKRK KKPPPPPLSP TPRTPPPAGS  60
GSHRAMAASS KKSTKQVVVA AKTTTGHRPK KAAAAPTTPS RGAPSASAAP VSSSWEQLKS  120
LLSCRSATAA ARVHDPAAPS SALSRLRSHG AGACGASLCA IRDVVDAASS ASAASTAAAS  180
LDRDTTPLTR SSRRAHRAAT SSSGGGGGHH ASLRGLSGCY ECRAINVEPM SRRYPRPREL  240
CACSQCGEVF NKADSLEHHQ AIRHAVSELG PEDSGRNIVE IIFKSSWQKR DRPICQIDRI  300
LKVHNAARTV ARFEAYRDAV RTRCRATAAR AAADGNELLR FHPAALACPL GLNGATSLCD  360
DDDACGVCAA IRHGFAPWAG AHPLGVRTTA SSGRAHDCGA AAAAAQQAGG CRAMLVCRVI  420
AGRVRRNDDD GGAEEEEGAF DSVAGDEAAS SVYGNLEELF VANPRAILPC FVVIYRVVPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12641RRRHHHHHNHTKRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2268110.0EU226811.1 Oryza sativa Japonica Group isolate E03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268120.0EU226812.1 Oryza sativa Japonica Group isolate E04 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268130.0EU226813.1 Oryza sativa Japonica Group isolate E05 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268150.0EU226815.1 Oryza sativa Japonica Group isolate E07 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268170.0EU226817.1 Oryza sativa Japonica Group isolate E09 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268190.0EU226819.1 Oryza sativa Japonica Group isolate E11 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268220.0EU226822.1 Oryza sativa Japonica Group isolate F02 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268230.0EU226823.1 Oryza sativa Japonica Group isolate F03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268240.0EU226824.1 Oryza sativa Japonica Group isolate F04 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268250.0EU226825.1 Oryza sativa Japonica Group isolate F05 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268260.0EU226826.1 Oryza sativa Japonica Group isolate F06 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268270.0EU226827.1 Oryza sativa Japonica Group isolate F07 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268280.0EU226828.1 Oryza sativa Japonica Group isolate F08 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268290.0EU226829.1 Oryza sativa Japonica Group isolate F09 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268310.0EU226831.1 Oryza sativa Japonica Group isolate F11 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268350.0EU226835.1 Oryza rufipogon isolate G03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268390.0EU226839.1 Oryza rufipogon isolate G07 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268470.0EU226847.1 Oryza rufipogon isolate H03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268480.0EU226848.1 Oryza rufipogon isolate H04 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268520.0EU226852.1 Oryza rufipogon isolate H08 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634299.10.0uncharacterized protein LOC4334944
TrEMBLA0A0E0P4K30.0A0A0E0P4K3_ORYRU; Uncharacterized protein
TrEMBLQ0JFD10.0Q0JFD1_ORYSJ; Os04g0115500 protein
STRINGORUFI04G00820.10.0(Oryza rufipogon)
STRINGOS04T0115500-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-65C2H2-like zinc finger protein