PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G00240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 831aa MW: 90131.1 Da PI: 4.9116 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.4 | 1e-07 | 52 | 83 | 1 | 27 |
--S---SGGGGTS.....--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.....tCkyGdrCkFaHgp 27 +kt+lC+ff+r C++Gd+C++aH++ ORUFI04G00240.1 52 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 83 8**********88*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-12 | 48 | 89 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.44E-6 | 49 | 88 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.338 | 51 | 84 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-5 | 52 | 83 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.70.330 | 2.2E-5 | 134 | 182 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS51687 | 43.703 | 226 | 831 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 2.31E-49 | 228 | 254 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 2.31E-49 | 286 | 389 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 2.31E-49 | 448 | 575 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 1.2E-62 | 471 | 575 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF13847 | 2.0E-9 | 515 | 577 | IPR025714 | Methyltransferase domain |
CDD | cd02440 | 2.06E-7 | 521 | 575 | No hit | No description |
Gene3D | G3DSA:3.40.50.150 | 1.2E-62 | 714 | 771 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 2.31E-49 | 719 | 831 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF05958 | 9.7E-7 | 724 | 767 | IPR010280 | (Uracil-5)-methyltransferase family |
PROSITE pattern | PS01230 | 0 | 727 | 759 | IPR030390 | RNA methyltransferase TrmA, active site |
Gene3D | G3DSA:3.40.50.150 | 1.2E-62 | 806 | 831 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001510 | Biological Process | RNA methylation | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 831 aa Download sequence Send to blast |
MEMEMEDNKA PSPPSPMESD VAGEKRKRED DASSSAVLAA ANNTGGAQHP MWKTSLCSFF 60 RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAD EVEEEVVTID 120 DKALDKCLGI SYATAKKKKG MTVGFVTFEN IEQLKNAIEV LTENQSGGKE IKIADANRRS 180 HQKLHTEKPV SDNGVTTENG TSVDVPPGET SAPEAAISNK KSVRDAVTPL AHMSYNDQLE 240 HKKNSVAQIL KRLTRNARKA CPTGIPLPDW VFKSKEIGGL PCKLEGILES PVINGYRNKC 300 EFSVGFSLEG KKTVGFMLGN FREGVTAVEE PVDCPNVSEI SCKYALMFQD FLQSSSLPVW 360 NRVDNCGFWR QFTVREGRCQ AQAVAQNAET QISEVMLIVQ VCSTGVDDAV MKDEFDKLTV 420 ALQQGAATCS PPLPLTTIVV QDHKGISNAA PADCPLIPLL VPKVDQSEGT VDKTRIHDHI 480 GNLWFSISPT AFFQVNTLAA ERLYTLAGDW ANLNSGTLLF DVCCGTGTIG LTLAHRVGMV 540 VGIEMNESAV SDAERNALIN GVSNCRFVCG KAEDVMGSLL TEYLGSPQQD IPVSEGAVSG 600 TVKDEEVIDS SKNSGENLDS SMQKNDNGES QQLGDAPADS SSSAIDEIKG NSNDRVGNGL 660 EGSHDEYNEV AGEDIHGEAS LINESVDLKV SDCLEDRKTS DDGSSISNND VTAATACQFE 720 DIVAIVDPPR VGLHPTVIKA LRTHPRIRRL VYISCNPDSL VANAIELCTP SSEKQEKNKG 780 NRGWRTMSSA GLARQRTKSM PNSEPFVPKR AMAVDLFPHT SHCEMVMLFE R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5xj1_A | 4e-16 | 485 | 582 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_A | 3e-16 | 485 | 582 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_B | 3e-16 | 485 | 582 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_C | 3e-16 | 485 | 582 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_D | 3e-16 | 485 | 582 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq0_A | 4e-16 | 485 | 582 | 275 | 372 | Uncharacterized RNA methyltransferase SP_1029 |
5zq1_A | 4e-16 | 485 | 582 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_A | 3e-16 | 485 | 582 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_B | 3e-16 | 485 | 582 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zth_A | 4e-16 | 485 | 582 | 275 | 372 | Uncharacterized RNA methyltransferase SP_1029 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120156 | 0.0 | AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636996.1 | 0.0 | zinc finger CCCH domain-containing protein 24 isoform X1 | ||||
Swissprot | Q8L7S3 | 0.0 | C3H24_ARATH; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A0E0P4D2 | 0.0 | A0A0E0P4D2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G00240.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8493 | 31 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28450.2 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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