PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G00240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 831aa    MW: 90131.1 Da    PI: 4.9116
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G00240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-075283127
                     --S---SGGGGTS.....--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartG.....tCkyGdrCkFaHgp 27
                     +kt+lC+ff+r        C++Gd+C++aH++
  ORUFI04G00240.1 52 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 83
                     8**********88*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.3E-124889IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.44E-64988IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3385184IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-55283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3302.2E-5134182IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168743.703226831IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533352.31E-49228254IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.31E-49286389IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.31E-49448575IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.2E-62471575IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.0E-9515577IPR025714Methyltransferase domain
CDDcd024402.06E-7521575No hitNo description
Gene3DG3DSA:3.40.50.1501.2E-62714771IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.31E-49719831IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059589.7E-7724767IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300727759IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.2E-62806831IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MEMEMEDNKA PSPPSPMESD VAGEKRKRED DASSSAVLAA ANNTGGAQHP MWKTSLCSFF  60
RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAD EVEEEVVTID  120
DKALDKCLGI SYATAKKKKG MTVGFVTFEN IEQLKNAIEV LTENQSGGKE IKIADANRRS  180
HQKLHTEKPV SDNGVTTENG TSVDVPPGET SAPEAAISNK KSVRDAVTPL AHMSYNDQLE  240
HKKNSVAQIL KRLTRNARKA CPTGIPLPDW VFKSKEIGGL PCKLEGILES PVINGYRNKC  300
EFSVGFSLEG KKTVGFMLGN FREGVTAVEE PVDCPNVSEI SCKYALMFQD FLQSSSLPVW  360
NRVDNCGFWR QFTVREGRCQ AQAVAQNAET QISEVMLIVQ VCSTGVDDAV MKDEFDKLTV  420
ALQQGAATCS PPLPLTTIVV QDHKGISNAA PADCPLIPLL VPKVDQSEGT VDKTRIHDHI  480
GNLWFSISPT AFFQVNTLAA ERLYTLAGDW ANLNSGTLLF DVCCGTGTIG LTLAHRVGMV  540
VGIEMNESAV SDAERNALIN GVSNCRFVCG KAEDVMGSLL TEYLGSPQQD IPVSEGAVSG  600
TVKDEEVIDS SKNSGENLDS SMQKNDNGES QQLGDAPADS SSSAIDEIKG NSNDRVGNGL  660
EGSHDEYNEV AGEDIHGEAS LINESVDLKV SDCLEDRKTS DDGSSISNND VTAATACQFE  720
DIVAIVDPPR VGLHPTVIKA LRTHPRIRRL VYISCNPDSL VANAIELCTP SSEKQEKNKG  780
NRGWRTMSSA GLARQRTKSM PNSEPFVPKR AMAVDLFPHT SHCEMVMLFE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-16485582274371Uncharacterized RNA methyltransferase SP_1029
5xj2_A3e-16485582274371Uncharacterized RNA methyltransferase SP_1029
5xj2_B3e-16485582274371Uncharacterized RNA methyltransferase SP_1029
5xj2_C3e-16485582274371Uncharacterized RNA methyltransferase SP_1029
5xj2_D3e-16485582274371Uncharacterized RNA methyltransferase SP_1029
5zq0_A4e-16485582275372Uncharacterized RNA methyltransferase SP_1029
5zq1_A4e-16485582274371Uncharacterized RNA methyltransferase SP_1029
5zq8_A3e-16485582274371Uncharacterized RNA methyltransferase SP_1029
5zq8_B3e-16485582274371Uncharacterized RNA methyltransferase SP_1029
5zth_A4e-16485582275372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201560.0AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636996.10.0zinc finger CCCH domain-containing protein 24 isoform X1
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0E0P4D20.0A0A0E0P4D2_ORYRU; Uncharacterized protein
STRINGORUFI04G00240.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]