PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI03G43030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 302aa MW: 32727.2 Da PI: 11.1074 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 38.3 | 2.9e-12 | 194 | 283 | 10 | 99 |
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e ++d ++P+ar+++i++a++ + s ea l+ ka e+f+ ++ ++ +a + +++++ ++++av + + ++fl d vp++ ORUFI03G43030.1 194 AEAVADHGAGSFPMARVRQIMRAEDATIRPSNEAVFLINKATEIFLKRFADDAYRNALKDRKKSIVYDNLSTAVCNQKRYKFLSDFVPQK 283 56777888889****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.3E-19 | 182 | 283 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.7E-13 | 204 | 267 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.5E-20 | 205 | 282 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence Send to blast |
MAGKKKALTN PASPSASASA STPKKSTATS KDRSTPKPRK NPNPKEEAPP PPPANNKRLN 60 PQGGSNRKKK ADAGTPSKKP KRQPPEPKPR KHKGAKSEKP HRVSGEGEKP TPTKKKKKES 120 SKEPKREKQQ ASAPMSTPSK KNKEAKRDTG GAGKPTPTKR KLGDVDPPQE RPSGEGQASS 180 PTPAKKRKDK AAAAEAVADH GAGSFPMARV RQIMRAEDAT IRPSNEAVFL INKATEIFLK 240 RFADDAYRNA LKDRKKSIVY DNLSTAVCNQ KRYKFLSDFV PQKVTAEDAL KAPVSSQVNQ 300 PQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 77 | 90 | KKPKRQPPEPKPRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK103607 | 0.0 | AK103607.1 Oryza sativa Japonica Group cDNA clone:J033133H15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628750.1 | 1e-163 | nuclear pore complex-interacting protein family member B13 | ||||
Refseq | XP_015628751.1 | 1e-163 | nuclear pore complex-interacting protein family member B13 | ||||
TrEMBL | A0A0E0P408 | 0.0 | A0A0E0P408_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G43030.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12826 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07980.1 | 4e-27 | nuclear factor Y, subunit C10 |