PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G42160.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 1640aa    MW: 182083 Da    PI: 5.2531
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G42160.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.3e-0814881529144
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                       r +W++ E ++++++ +q+G++ ++ I + ++  ++++q++ ++
  ORUFI03G42160.2 1488 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 1529
                       569*******************.*********.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513757.454939IPR002885Pentatricopeptide repeat
PfamPF015350.0181439IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.3644074IPR002885Pentatricopeptide repeat
PfamPF015350.0414271IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.89575109IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.881110140IPR002885Pentatricopeptide repeat
PfamPF015350.0019115141IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.723141175IPR002885Pentatricopeptide repeat
PfamPF015350.026144172IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.149176211IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.607212242IPR002885Pentatricopeptide repeat
PfamPF015350.022217239IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.977243283IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.941319349IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.5E-8348385IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.353350380IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.8E-4353377IPR002885Pentatricopeptide repeat
PfamPF015357.2E-4353377IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.415385419IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.5E-8423482IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.512451485IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0023453486IPR002885Pentatricopeptide repeat
PfamPF015356.1E-6453483IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.031486521IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.5E-8552609IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.744554584IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.53588622IPR002885Pentatricopeptide repeat
SuperFamilySSF466898.97E-1014791535IPR009057Homeodomain-like
PfamPF159638.1E-2514811562No hitNo description
SMARTSM007177.5E-914871535IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-514881530IPR009057Homeodomain-like
CDDcd001672.60E-614901530No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1640 aa     Download sequence    Send to blast
MLRAAYRPGL FLRNNLLALY CRCGDMRHAR LLFDGMPRRD AVSWNTLIAG YSGLGSCRLA  60
LDAFRDARAS GDGVDRFTFA AALASCARVG DWRDGRVVHG LAVVSGLART AFLTNSVIDM  120
YAKCGMIDEV RLLFDRAEER GEASWNLLLS AYVRMGWPEV AVNVLVWMHR SGVKLDSFAL  180
GGILKACSEL GDSEDVRRML HSCVVKVGLD LDVFVGSAMV DMYAKNGGLE EAIKVFDCIP  240
NQNVVVYNAM IAGFARLGND PCPEIRIEAV TLFSNMLKKR IKPSKFTFKS VLEVCNLTNA  300
VRCGRQIHAH VILSGLQGDE FIASVLINLY SKARCVNDSL RCFDMTVKED VFIWTSMITA  360
FVQNEHFEKA LYLFRELLYT RKGTDQFTIS SVMSACAALS VPTTCKQIHC HAVKTGLDQF  420
TVSGNSQIAM YRNIGDLKAS KQTFEQISCL DTFSWSAMIL SYAVHGYESK ALELFEKMKN  480
LGVMMNESAS LAALIACSHQ GLGDEGLRYY ENTIPDDGFS LDVKLKACMV DLLGRVGKIA  540
DAEDFIMSSG SENDPILWHA LLRACRVHGD KERCTKIGEK LMELEPFSAS SYVMLYNLYM  600
DAGKISLAMR TRGLMRERGI SNEAGISWTD FGGSIHNFID GDNSCSHNTI HTTLEELLVR  660
VKQKTEHGGT NIWELEFQSR KLSESSISRH GELLAVAFGL TTLPSVAPVR VMKNQRISWE  720
SHETLKLLSE APSAPSLHRR PDLEGEPASS PSRRHRSQDS STLPANKVRV LLDPVPVQEE  780
AYEAGGHIAM IDDEADFGNI TDATEGQAAA KFRPKARAKP RKTSLPSRSL APHPTVESTD  840
ENVETLNKDS TSQEQSVDKK AASLGCHGSE TDGNACASGG ILDTPSEDVV TVSLGLVNNP  900
DVALDSSTVF ASSAHKVSQN EENNDDVSHV ATHKENMVVS DTQAPPTCCS ARTIDDLADF  960
EGLCDDTHVE EERVAKFQPK FRVKTSKAAS KSQRTNQKAG VSTVDVLSQN KEDGKDQAGC  1020
NDKQLHSPTR HQESVQISYS QAHLGTHNST IDDVANSDSI MEEPAQEEMA AKFQPRLRPK  1080
AGGASPGVAE TIDAACVATP EFGVSSVDVV SQDTEEDSHR EGLSDDSCQK YIDEEAITTS  1140
GTGPPQDLDD TVDLDSHAEM VNPHPDGSPL IIEELSAGTT VKFQPYVRRK KGKGKSVSFV  1200
PPNVSHAHAP TDTNFETSNS SHFCKDIATG ESLSNLPQQA SEKICISGEH HPDDQECNDP  1260
ENQYHEGEPY DHVIEQEPER DARETGTSMK LRNRRKLQKD GIPEHTADDI MDEDFGEPPS  1320
DEQDNDSGDE YTARGKQKGR RKSREKNINK EPSRGTKRTS GDSTIEESQK QKLQKNKSKA  1380
SSGGQKKTSK DSSVEQPEKK LTHRIRRKRM EEVKTLLETP DHEIDRMKLS GKEIPSGPSS  1440
SNHSTSQFGD MDDEYNEQDN WDNDRTENHV VENTTKLNYH SYMNRQTRAK WSKSETDKFY  1500
EGLQQFGSDF AMIQHLFPDK SRNQVRQKFK AEEKKHPMQV HDAIMHRSRD NLYFKEVIKK  1560
LNIEDVQPDI NNTHEQEGTS NEEDPGNKNI PGGLINEEEE NGLDWSDKEL DMHRSEVEEK  1620
EHVSTNDDDD DDLGDVFDWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D3e-63158313337PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0968560.0AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633004.10.0uncharacterized protein LOC9267825
TrEMBLA0A0E0P3P60.0A0A0E0P3P6_ORYRU; Uncharacterized protein
STRINGORUFI03G42160.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.16e-32MYB_related family protein